Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6393
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...    29   0.44 
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    28   1.3  
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce...    27   1.8  
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    27   2.3  
SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo...    27   3.1  
SPAC652.01 |||BC10 family protein|Schizosaccharomyces pombe|chr ...    26   5.4  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    26   5.4  
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo...    25   7.1  

>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 9/60 (15%)
 Frame = +3

Query: 195 YFVGFQN-SEVMINRDNWGHSYCDVRGEILG------SSQD--EHQRKHLPKVFSSIKNE 347
           Y VG+ N + ++++   WGHS+ +V  E+L        +QD  E ++K+L ++ +S + +
Sbjct: 142 YIVGYPNEARLLMDNFKWGHSFFEVNEELLDIYAQCHDAQDIQEKEKKYLEEMEASYQEQ 201


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 641 PTTHRIQERAVNLSILPVSGPGEISRVESN*AAGST 534
           P  H +    VN S+ P+S    I++V  N   GST
Sbjct: 267 PALHTVDSTNVNGSLSPLSNSSSINQVHQNETHGST 302


>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 21/62 (33%), Positives = 28/62 (45%)
 Frame = -1

Query: 626 IQERAVNLSILPVSGPGEISRVESN*AAGSTPGGALPSIPLSFSFATILPPESKIFGFPE 447
           ++   V L  LP+ G      VES     + P  ALP  PLSFS     P ++     PE
Sbjct: 397 LENELVKLFFLPLDGD-----VESPHPTSTMPE-ALPREPLSFSLPEKAPEKATNISIPE 450

Query: 446 AA 441
           +A
Sbjct: 451 SA 452


>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -2

Query: 571 FPVLSQIKPQAPLLVVPFRQFL*VSALQPYSPRSPKSLVSRKLPA 437
           FPVL QI+P  P L +  R F+  S+    SP++ +    R LP+
Sbjct: 441 FPVLPQIRPSTP-LNLKLRNFIISSSEDSTSPKAKE--FDRPLPS 482


>SPBC4B4.01c |||fumble family pantothenate kinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -1

Query: 632 HRIQERAVNLSILPVSGPGEISRVESN*AAGSTPGGALPSIPLSFSFATIL 480
           H +      +SIL V+GP +  R+  +   G T  G L  +  + SF  +L
Sbjct: 205 HMLVNIGSGVSILKVTGPSQFERIGGSSLGGGTLWGLLSLLTPANSFDEML 255


>SPAC652.01 |||BC10 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 108

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 604 RLTALSWIRWVVG 642
           RL  LSWIRW+ G
Sbjct: 81  RLVRLSWIRWLAG 93


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 240 NWGHSYCDVRGEILGSSQDEHQRKHLPKVFSSIKNE 347
           NW   +  ++G I  SSQ E    +L KV  SI +E
Sbjct: 123 NWNDFFASLQGVIAASSQSEFSNFYL-KVLLSIGDE 157


>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
           es pombe|chr 2|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 4/79 (5%)
 Frame = +2

Query: 314 FAKGVFINQERKLEVRRRLDTA----LVLTVNMSSSDPPTLLQWLGGQLPGNQRFWTPGG 481
           F  G+F+ +  K   +R +  A    L    NM             G  P     WT  G
Sbjct: 258 FNAGLFVFKPLKAHYKRLMALARFPKLYDNANMMEQSLLNFAYNSAGAFPWESLDWTFNG 317

Query: 482 VWLQS*NLKELTEGHHQEW 538
           +W +  +L  L   H + W
Sbjct: 318 LWARKNDLPYLKAVHGKHW 336


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,819,135
Number of Sequences: 5004
Number of extensions: 58803
Number of successful extensions: 156
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)