Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6393
         (647 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0189 + 32214702-32215154                                         29   2.4  
09_06_0076 + 20710482-20710670,20711313-20711547,20711664-207116...    27   9.7  
06_03_1280 - 28930959-28931540                                         27   9.7  
05_04_0274 - 19636163-19636280,19636359-19636423,19636485-196366...    27   9.7  
02_05_0841 + 32129863-32130294,32130395-32130459,32130565-321307...    27   9.7  
01_01_1018 - 8046819-8046876,8046995-8047212,8048099-8048177,804...    27   9.7  

>03_06_0189 + 32214702-32215154
          Length = 150

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -1

Query: 548 AAGSTPGGALPSIPLSFSFATILPPESKIFGFPEAA 441
           AA + P  ALP +P   +  T LPP   I   P+AA
Sbjct: 30  AAAAAPPAALPVLPAVPALPTTLPPMPAIPAVPQAA 65


>09_06_0076 + 20710482-20710670,20711313-20711547,20711664-20711689,
            20712000-20712293,20712603-20712728,20712827-20712896,
            20712992-20713182,20713394-20713519,20713878-20714279,
            20714364-20714758,20714861-20715315,20715403-20715524,
            20715653-20715693,20716026-20716129,20716363-20716576,
            20717667-20717780,20718576-20718612
          Length = 1046

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 18/54 (33%), Positives = 23/54 (42%)
 Frame = -3

Query: 567  PC*VKLSRRLHSWWCPSVNSFKFQLCNHTPPGVQNLWFPGSCPPSHCSNVGGSL 406
            PC   L R   S W   V++   Q C  + P  +   +P   PP   S VGG L
Sbjct: 936  PCKTSLPRESASAWWTQVDTVSGQGCGESSPLCRPPAYPPE-PPVVLSLVGGQL 988


>06_03_1280 - 28930959-28931540
          Length = 193

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -3

Query: 639 HHPPNPRKSC*SVNPSGVRA 580
           HHPP P  SC S  P+   A
Sbjct: 129 HHPPQPSSSCSSSKPAAAAA 148


>05_04_0274 -
           19636163-19636280,19636359-19636423,19636485-19636637,
           19636738-19637043,19637137-19637314,19637452-19637687,
           19637835-19638032,19638171-19638293,19638729-19639013,
           19639186-19639326,19639799-19640188,19640465-19640647,
           19640934-19641020
          Length = 820

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 22/71 (30%), Positives = 33/71 (46%)
 Frame = -1

Query: 641 PTTHRIQERAVNLSILPVSGPGEISRVESN*AAGSTPGGALPSIPLSFSFATILPPESKI 462
           PTT  +     NL++L ++ P     ++    +G     A P+  L  +FAT    E  I
Sbjct: 152 PTTVLLFGAHTNLALLLMAHPRLARNIDRVYVSGGAVRAADPAGNLFTAFATNPFAEFNI 211

Query: 461 FGFPEAARRAI 429
           FG P AA + I
Sbjct: 212 FGDPFAAYQVI 222


>02_05_0841 +
           32129863-32130294,32130395-32130459,32130565-32130774,
           32130943-32131024
          Length = 262

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = -1

Query: 581 PGEISRVESN*AAGSTPGGALPS-IPLSFSFAT--ILPPESKIFGFPEAARRA 432
           PGE+S +ES+ A G      LPS    S   AT   +PP ++I  F  AA  A
Sbjct: 176 PGEVSDLESDLAGGQKRSRPLPSAATASAQQATRPKIPPAAEIEAFFAAAEEA 228


>01_01_1018 -
           8046819-8046876,8046995-8047212,8048099-8048177,
           8048455-8048540,8048698-8048983,8049063-8049205,
           8049308-8049508,8049626-8049754,8050463-8050738,
           8050823-8051098,8051364-8052364,8052452-8052634,
           8052865-8052937,8053205-8053313,8053622-8053785
          Length = 1093

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 2/92 (2%)
 Frame = +1

Query: 277 FLDRRKTNISESICQRCFHQSRTKVRGSKAIRY-RPSSNRKYVI*RSADVTTMARRAASG 453
           +++    N   SIC RC H S  K +  K   Y    +  ++ +          +  A  
Sbjct: 561 YVEVENGNDKSSICGRCHHLSSAKAKYQKRFSYAETDAEAEWWVQCDKCKAWQHQICALF 620

Query: 454 KPKILDSGGSMV-AKLKLKGIDGRAPPGVEPA 546
            PKI+D       AK  LK  D      +EP+
Sbjct: 621 NPKIVDPEAEYTCAKCFLKEKDNEDVDSLEPS 652


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,795,300
Number of Sequences: 37544
Number of extensions: 440501
Number of successful extensions: 1074
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)