Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6393
         (647 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68117-2|CAA92178.1|  333|Caenorhabditis elegans Hypothetical pr...    31   0.93 
AL021474-2|CAA16309.3|  655|Caenorhabditis elegans Hypothetical ...    30   1.2  
AF047656-1|AAC05110.1|  230|Caenorhabditis elegans Lysozyme prot...    30   1.6  
U23517-11|AAY44017.1|  288|Caenorhabditis elegans Hypothetical p...    28   5.0  
Z47808-12|CAB61003.1|  902|Caenorhabditis elegans Hypothetical p...    27   8.7  
Z47808-11|CAD36487.1|  928|Caenorhabditis elegans Hypothetical p...    27   8.7  
Z35595-13|CAA84639.2|  902|Caenorhabditis elegans Hypothetical p...    27   8.7  
Z35595-12|CAD36478.1|  928|Caenorhabditis elegans Hypothetical p...    27   8.7  
Z35595-11|CAJ34992.1|  769|Caenorhabditis elegans Hypothetical p...    27   8.7  
U23515-13|AAK21453.1|  823|Caenorhabditis elegans Hypothetical p...    27   8.7  
AJ132947-1|CAC29085.1|  902|Caenorhabditis elegans receptor tyro...    27   8.7  
AJ132946-1|CAC29084.1|  928|Caenorhabditis elegans receptor tyro...    27   8.7  
AC024791-31|AAF60655.1|  181|Caenorhabditis elegans Hypothetical...    27   8.7  

>Z68117-2|CAA92178.1|  333|Caenorhabditis elegans Hypothetical
           protein F45E6.4 protein.
          Length = 333

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 525 CPSVNSFKFQLCNHTPPGVQNLWFPGSCPPSHCSN 421
           CP  ++F F  C     G++  +FPG+CP   CS+
Sbjct: 203 CPCQHAFAFPAC-----GMETGFFPGTCPEMTCSS 232


>AL021474-2|CAA16309.3|  655|Caenorhabditis elegans Hypothetical
           protein Y32F6A.3 protein.
          Length = 655

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -1

Query: 614 AVNLSILPVSGPGEISRVESN*AAGSTPGG-ALPSIPLSFSFATILPPESKIFGFPEAAR 438
           A N S+   S P  + R  S  +  +TP G A P  PLS S +    P+S   G P + +
Sbjct: 513 ATNTSVSS-STPRSVVRTTSTSSVPTTPTGLAAPKTPLSASVSATNEPDSTTNGTPLSRK 571

Query: 437 RAI 429
           R++
Sbjct: 572 RSM 574


>AF047656-1|AAC05110.1|  230|Caenorhabditis elegans Lysozyme protein
           10 protein.
          Length = 230

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = +2

Query: 524 HHQEWSLRLNLTQHGKSHQA---RTPEGLTD*QLFLGFGGW 637
           ++  W   + L  HG+SH      T +G+ D   F+ FGGW
Sbjct: 164 NYYNWQDIVGLDYHGQSHLMLWWATYDGIKDFSKFVAFGGW 204


>U23517-11|AAY44017.1|  288|Caenorhabditis elegans Hypothetical
           protein D1022.9 protein.
          Length = 288

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 530 QEWSLRLNLTQHGKSHQARTPEGLTD*QLFL 622
           Q W L L    H K + ARTP  + D ++F+
Sbjct: 59  QYWPLMLARFSHEKPYVARTPAAIADAEMFI 89


>Z47808-12|CAB61003.1|  902|Caenorhabditis elegans Hypothetical
           protein C01G6.8b protein.
          Length = 902

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = +1

Query: 448 SGKPKILDSGGSMVAKLKLKG----IDGRAPPGVEPAA*FDSTREISPGP 585
           S  P +++S  +     KL G    I GR PP VE  +   S + + P P
Sbjct: 481 SSAPSVINSAANSAYYRKLNGTSTPIMGRVPPHVEMTSLLPSAQHLGPPP 530


>Z47808-11|CAD36487.1|  928|Caenorhabditis elegans Hypothetical
           protein C01G6.8a protein.
          Length = 928

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = +1

Query: 448 SGKPKILDSGGSMVAKLKLKG----IDGRAPPGVEPAA*FDSTREISPGP 585
           S  P +++S  +     KL G    I GR PP VE  +   S + + P P
Sbjct: 507 SSAPSVINSAANSAYYRKLNGTSTPIMGRVPPHVEMTSLLPSAQHLGPPP 556


>Z35595-13|CAA84639.2|  902|Caenorhabditis elegans Hypothetical
           protein C01G6.8b protein.
          Length = 902

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = +1

Query: 448 SGKPKILDSGGSMVAKLKLKG----IDGRAPPGVEPAA*FDSTREISPGP 585
           S  P +++S  +     KL G    I GR PP VE  +   S + + P P
Sbjct: 481 SSAPSVINSAANSAYYRKLNGTSTPIMGRVPPHVEMTSLLPSAQHLGPPP 530


>Z35595-12|CAD36478.1|  928|Caenorhabditis elegans Hypothetical
           protein C01G6.8a protein.
          Length = 928

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = +1

Query: 448 SGKPKILDSGGSMVAKLKLKG----IDGRAPPGVEPAA*FDSTREISPGP 585
           S  P +++S  +     KL G    I GR PP VE  +   S + + P P
Sbjct: 507 SSAPSVINSAANSAYYRKLNGTSTPIMGRVPPHVEMTSLLPSAQHLGPPP 556


>Z35595-11|CAJ34992.1|  769|Caenorhabditis elegans Hypothetical
           protein C01G6.8c protein.
          Length = 769

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = +1

Query: 448 SGKPKILDSGGSMVAKLKLKG----IDGRAPPGVEPAA*FDSTREISPGP 585
           S  P +++S  +     KL G    I GR PP VE  +   S + + P P
Sbjct: 348 SSAPSVINSAANSAYYRKLNGTSTPIMGRVPPHVEMTSLLPSAQHLGPPP 397


>U23515-13|AAK21453.1|  823|Caenorhabditis elegans Hypothetical
           protein R144.2a protein.
          Length = 823

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 527 HQEWSLRLNLTQHGKSHQARTP 592
           H +W ++ NL +HG ++ A  P
Sbjct: 696 HMDWHVKQNLARHGSNNSAAVP 717


>AJ132947-1|CAC29085.1|  902|Caenorhabditis elegans receptor
           tyrosine kinase protein.
          Length = 902

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = +1

Query: 448 SGKPKILDSGGSMVAKLKLKG----IDGRAPPGVEPAA*FDSTREISPGP 585
           S  P +++S  +     KL G    I GR PP VE  +   S + + P P
Sbjct: 481 SSAPSVINSAANSAYYRKLNGTSTPIMGRVPPHVEMTSLLPSAQHLGPPP 530


>AJ132946-1|CAC29084.1|  928|Caenorhabditis elegans receptor
           tyrosine kinase protein.
          Length = 928

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = +1

Query: 448 SGKPKILDSGGSMVAKLKLKG----IDGRAPPGVEPAA*FDSTREISPGP 585
           S  P +++S  +     KL G    I GR PP VE  +   S + + P P
Sbjct: 507 SSAPSVINSAANSAYYRKLNGTSTPIMGRVPPHVEMTSLLPSAQHLGPPP 556


>AC024791-31|AAF60655.1|  181|Caenorhabditis elegans Hypothetical
           protein Y47G6A.3 protein.
          Length = 181

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 538 EPAA*FDSTREISPGPDTGRIDRL 609
           EP+A FD+  ++ PG    RIDR+
Sbjct: 100 EPSALFDNANDLLPGQKEERIDRM 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,084,326
Number of Sequences: 27780
Number of extensions: 354705
Number of successful extensions: 837
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)