Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6392
         (473 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.36 
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    28   0.83 
SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|...    27   1.9  
SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces pombe...    26   2.5  
SPAC23H4.11c |cnl2||centromere localized protein Cnl2|Schizosacc...    25   4.5  
SPBC409.10 |ade7||phosphoribosylamidoimidazolesuccinocarboxamide...    25   4.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   4.5  
SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|c...    25   5.9  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   5.9  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    25   5.9  
SPBC3B9.10 |vti1||SNARE Vti1|Schizosaccharomyces pombe|chr 2|||M...    25   7.8  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   7.8  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   7.8  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    25   7.8  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.1 bits (62), Expect = 0.36
 Identities = 21/80 (26%), Positives = 29/80 (36%)
 Frame = -3

Query: 258  PNPQGPGESPRRSYDQPKDQPTVWTMTPARTAEIGPSAL*THWGWDAPRPGHEGQPATDS 79
            P P G    P  S   P  +P+V      + +   P           P+P     P    
Sbjct: 1077 PAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPS-VAAPPVPV 1135

Query: 78   QRRAPPLPEPKAASQPVHTP 19
               APP+P+P  A+ PV  P
Sbjct: 1136 PSGAPPVPKPSVAAPPVPAP 1155



 Score = 27.5 bits (58), Expect = 1.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 117  PRPGHEGQPATDSQRRAPPLPEPKAASQPVHTP 19
            P+P     P   +   APP+P+P  A+ PV  P
Sbjct: 1143 PKPS-VAAPPVPAPSGAPPVPKPSVAAPPVPAP 1174



 Score = 27.1 bits (57), Expect = 1.5
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -3

Query: 117  PRPGHEGQPATDSQRRAPPLPEPKAASQPVHTP 19
            P+P   G P       APP+P P A   PV  P
Sbjct: 1201 PKPS-VGVPPVPPPSTAPPVPTPSAGLPPVPVP 1232



 Score = 26.6 bits (56), Expect = 1.9
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = -3

Query: 117  PRPGHEGQPATDSQRRAPPLPEPKAASQPVHTPPQ 13
            P+P     P        PP+P+P A   PV  P +
Sbjct: 1162 PKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSE 1196



 Score = 26.6 bits (56), Expect = 1.9
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -3

Query: 117  PRPGHEGQPATDSQRRAPPLPEPKAASQPVHTP 19
            P+P   G P       APP+P+P     PV  P
Sbjct: 1182 PKPA-AGVPPVPPPSEAPPVPKPSVGVPPVPPP 1213



 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -3

Query: 117  PRPGHEGQPATDSQRRAPPLPEPKAASQPVHTP 19
            P P     P      +APP+P P + +  V TP
Sbjct: 1220 PTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTP 1252



 Score = 24.6 bits (51), Expect = 7.8
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
 Frame = -3

Query: 114  RPGHEGQPATDSQRRAPP-----LPEPKAASQPVHTPPQ 13
            RP ++G+ A+  +  APP     LP     S P   PP+
Sbjct: 950  RPSNDGRKASGPRPAAPPSIPPPLPVSNILSSPTSEPPK 988



 Score = 24.6 bits (51), Expect = 7.8
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 93   PATDSQRRAPPLPEPKAASQPVHTP 19
            P      +APP+P P A + P+  P
Sbjct: 1013 PVPKLSSKAPPVPLPSADAPPIPVP 1037


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 27.9 bits (59), Expect = 0.83
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 258 PNPQGPGESPRRSYDQPKDQPTVWTMTPARTA 163
           PNPQG   +       P+DQP+     P RTA
Sbjct: 299 PNPQGNVGAQSLQSMSPQDQPSTQQQQPQRTA 330


>SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 258

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -1

Query: 392 VQVATTMVALYRRLGCDPVQELTEATMPSEHLRDPESEA 276
           V+  +  V L R++G +  Q++ E T    H  +PESEA
Sbjct: 220 VKPGSIRVNLIRKMGHEAKQQVNEYTAIPLHEMNPESEA 258


>SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 229

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 132 WGWDAPRPGHEGQPATDSQRRAPPLPEPKAASQPVHTPPQRR 7
           W +  P+P  +    T  QR+   LPE  + S    TPP+ R
Sbjct: 166 WQFVRPQPTFDDLQLTPLQRKLMGLPEGGSTSGKHLTPPRYR 207


>SPAC23H4.11c |cnl2||centromere localized protein
           Cnl2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 467 VSYFYDEDTAPPLPFGAVDERMLSRVQVATT 375
           V  FY   +A PL    ++ER+   VQ A T
Sbjct: 98  VEEFYTSHSAKPLDISEINERLSEAVQSAYT 128


>SPBC409.10 |ade7||phosphoribosylamidoimidazolesuccinocarboxamide
           synthase Ade7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 299

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = -1

Query: 329 LTEATMPSEHLRDPESEASSVTIHPIHKDRANRLDGPTTSRRISQPS 189
           + EA    E L  P ++A+      IH D  +++ GP  ++++++ S
Sbjct: 142 MKEAEAFPEPLFTPSTKAAEGHDENIHPDEVSKIVGPELAKQVAETS 188


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -3

Query: 117 PRPGHEGQPATDSQRRAPPLPEPKAASQPVHTPP 16
           P P     P+T   R+ PPL   +A S P   PP
Sbjct: 362 PPPPPRSAPSTG--RQPPPLSSSRAVSNPPAPPP 393



 Score = 25.0 bits (52), Expect = 5.9
 Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
 Frame = -3

Query: 117 PRPGHEGQ-PATDSQRRAPPLPEPKAASQPVHTPP 16
           PR    G  P     R APP P P++A      PP
Sbjct: 343 PRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPP 377


>SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 521

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 410 ERMLSRVQVATTMVALYRRLGCDPVQELTEA 318
           ER+L R QV +    + RRLGC  +    EA
Sbjct: 343 ERILLRPQVISNHPEIIRRLGCIAMNTPVEA 373


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 98  PSCPGRGASQPQCVQSAEGPISAVRAGVMVQ 190
           PS P R  S+P  +   + P   VR  VM Q
Sbjct: 120 PSLPSRPGSRPSVLNQEQVPPPPVRPNVMSQ 150


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
            SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +3

Query: 36   GTPPWVLEAEALAADYQWRADLRARDVARPSPSVFRARRDQSRR 167
            G  PWV E  A  A+Y  R +   R +   +  V + + +  RR
Sbjct: 898  GKQPWVDEINARRANYSTRLEEYQRQINSYNVRVAQIKSEHQRR 941


>SPBC3B9.10 |vti1||SNARE Vti1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 214

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
 Frame = -2

Query: 253 STRTGRIASTVLRPAEGSANRLDHD-----SSTDRRDWSLRALNTL 131
           +  T  I +++LR   G  N+L+H       ++   D SLR L T+
Sbjct: 138 ANETEGIGASILRDLHGQRNQLEHSLEMLGDTSGHLDRSLRTLKTM 183


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +3

Query: 105 ARDVARPSPSVFRARRDQSRRSVLESWSRRLADPSAGRRT 224
           A + A    +  RAR+    RS    WS R+  P+ G  T
Sbjct: 232 ASNAANSGSNTIRARQTTRTRSNTLPWSPRVFGPTLGYNT 271


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = +1

Query: 277  ASLSGSRRCSLGMVASVSSCTGSQPSRR*SATIVVATWTRESIRSSTAPNGRGGAVSSS 453
            AS++GS   S+  V+S SS  G+  S   +A    AT + ++   S+       A SSS
Sbjct: 1085 ASVTGSPTSSVTAVSSTSSVEGTASSTI-AAAASAATLSSDAASGSSTVTSSATASSSS 1142


>SPAC23C4.19 |spt5||transcription elongation factor
            Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = -3

Query: 138  THWGWDAPRPGHEGQPATDSQRRAPPLP 55
            T   W AP PG       DS +  PP P
Sbjct: 963  TPGAWAAPTPGGWDDEEGDSPKYVPPSP 990


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,279,401
Number of Sequences: 5004
Number of extensions: 51345
Number of successful extensions: 190
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)