Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6390
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    28   1.6  
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    27   2.1  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    27   3.7  
SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase |Schizosa...    26   6.4  
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc...    25   8.5  
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ...    25   8.5  

>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -1

Query: 362 VGSRCEEVVALSLLGDLNVDGVHINLGEEVTQICLDRWFR 243
           +G  C+ +   SLL D N++G H+ +    T   ++ W R
Sbjct: 416 LGKTCQTIAFFSLLMDKNINGPHLVIAPAST---MENWLR 452


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 235 SSGRNQRSRQIWVTSSPRLI*TPSTFRSPSKERATTSSQRLPT 363
           S G NQ+S ++    SP+    PST  +P K +   SS+ L T
Sbjct: 284 SLGHNQKSDRVSKDVSPQHQANPSTLNNPLKTQNFDSSKNLYT 326


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 468 EFSLDMDESYELYISSTSSDKVNATIRGNS 557
           EF   MD+    YI  +SSD ++   R NS
Sbjct: 742 EFQTTMDDILPCYICESSSDSLSVISRSNS 771


>SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 440

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -3

Query: 573 DGRRRKSFHVW*RSLYHSTLMKCRARSSHPCPGRILGYK 457
           DG+ +  F V    LY+  L     +S HP P   L YK
Sbjct: 239 DGKVKIGFDVAASELYNGKLYDLDFKSEHPKPENKLDYK 277


>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 381

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +3

Query: 123 WRWTCENNRCTKIRNEPENKEPVLSL 200
           W W C N RC       +N E  L+L
Sbjct: 156 WGWLCVNTRCLYYDTGSKNTEDHLTL 181


>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 672 PYRGILLDTARNFYSIESIKR 734
           PY G+  DT + F S+ES K+
Sbjct: 70  PYAGMTSDTKKGFNSVESRKK 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,041,640
Number of Sequences: 5004
Number of extensions: 63368
Number of successful extensions: 179
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)