Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6390
(737 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0319 + 20171486-20171800,20171882-20171956,20172160-201721... 74 1e-13
05_01_0121 - 833885-833949,834180-834430,834545-834604,834893-83... 69 5e-12
07_03_1000 - 23220878-23221821,23222164-23223001 66 3e-11
03_02_0187 - 6248226-6249226,6249296-6250148 53 3e-07
06_01_0970 - 7490884-7491013,7491297-7491574,7491683-7491952,749... 30 1.7
06_03_0627 + 22903346-22903523,22906010-22906152,22906235-229066... 29 2.9
11_02_0045 - 7705728-7707581 28 6.7
05_06_0277 + 26885621-26886064,26886148-26886317,26887038-268879... 28 6.7
03_06_0708 - 35667547-35667578,35667741-35667794,35667828-35668995 28 6.7
01_01_1060 - 8363272-8365912,8366375-8366443,8366479-8366843,836... 28 6.7
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329... 28 8.9
>05_04_0319 +
20171486-20171800,20171882-20171956,20172160-20172195,
20172302-20172413,20173082-20173152,20173287-20173417,
20173718-20173783,20174003-20174103,20174311-20174370,
20174463-20174496,20174852-20174950,20175019-20175078,
20175700-20175874,20175900-20175950,20176603-20176632
Length = 471
Score = 74.1 bits (174), Expect = 1e-13
Identities = 57/189 (30%), Positives = 92/189 (48%), Gaps = 8/189 (4%)
Frame = +3
Query: 189 VLSLEACKMFCDDYGLL--WPKPTIETNLGNFLSKINMNTIDIQITKQGKSDDLLTAAAD 362
V ++ +C + D+ ++ WP P + G L + + +K + +L A
Sbjct: 11 VAAVVSCAVAADEGSVVEVWPMPATASKGGQTLHVSRELRMTAEGSKYADGEAILKDAFQ 70
Query: 363 RFKTLVS-SSVPKGFSAKA---AGKSVTVYLVNDNPYIREFSLDMDESYELYISSTSSDK 530
R TL+ V G S AG +V V+L D E + +DESY L + +T S
Sbjct: 71 RMVTLIELDHVINGSSQGLPLLAGVNVVVHLPGD-----ELNFGVDESYNLSVPATGSP- 124
Query: 531 VNATIRGNSFFGVRHGLETLSQLIVYDDIRNNLLIVRDV--TIKDRPVYPYRGILLDTAR 704
+ A I + FG H LET SQL +D + L+ ++ +I D P +PYRG+L+DT+R
Sbjct: 125 IYAQIEAQTVFGALHALETFSQLCNFD-FTSRLIELQSAPWSITDMPRFPYRGLLIDTSR 183
Query: 705 NFYSIESIK 731
++ + IK
Sbjct: 184 HYLPVPVIK 192
>05_01_0121 -
833885-833949,834180-834430,834545-834604,834893-834926,
835746-835805,836409-836509,836939-837039,837209-837289,
837580-837650,837738-837849,838138-838173,838865-838951,
839055-839396
Length = 466
Score = 68.5 bits (160), Expect = 5e-12
Identities = 53/174 (30%), Positives = 83/174 (47%), Gaps = 8/174 (4%)
Frame = +3
Query: 237 LWPKPTIETNLGNFLSKINMNTIDIQITKQGKSDDLLTAAA----DRFKTLVSSSVPKGF 404
LWP P NF S +D + G+ AA +R+++LV S
Sbjct: 39 LWPLPR------NFTSGSRTLLVDPDLALDGQGPGGAAAAVAEAFERYRSLVFSPWAHAA 92
Query: 405 SAKAAGKSVTVYLVNDNPYIREFSLDMDESYELYISST---SSDKVNATIRGNSFFGVRH 575
+ G V V + L +DESY +Y+++ +S ATI N+ +G
Sbjct: 93 RNASGGYDVGKLTVVVASADEKLELGVDESYTIYVAAAGGVNSIVGGATIEANTIYGAIR 152
Query: 576 GLETLSQLIVYD-DIRNNLLIVRDVTIKDRPVYPYRGILLDTARNFYSIESIKR 734
GLET SQL V++ D +N + I+D P + +RG+LLDT+R+F ++ IK+
Sbjct: 153 GLETFSQLCVFNYDTKNVEVRHAPWYIEDEPRFAFRGLLLDTSRHFLPVDVIKQ 206
>07_03_1000 - 23220878-23221821,23222164-23223001
Length = 593
Score = 66.1 bits (154), Expect = 3e-11
Identities = 44/132 (33%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Frame = +3
Query: 357 ADRFKTLVSSSV---PKGFSAKAAGKSVTV-YL-VNDNPYIREFSLDMDESYELYISSTS 521
A+R++ LV+ +V G A AAG+ + YL + + +DESY L I
Sbjct: 81 AERYRPLVTPAVNVTAGGAGAGAAGRGAELGYLTLAVSDLHAPLQHGVDESYALEILPAG 140
Query: 522 SDKVNATIRGNSFFGVRHGLETLSQLIVYDDIRNNLLIVRDVTIKDRPVYPYRGILLDTA 701
+ AT+ + +G GLET SQL + +L+ V ++DRP+YP+RG++LDT
Sbjct: 141 AA---ATVTAATAWGAMRGLETFSQLAWWCGRERAVLVAAGVRVEDRPLYPHRGLMLDTG 197
Query: 702 RNFYSIESIKRT 737
R ++ + I RT
Sbjct: 198 RTYFPVADILRT 209
>03_02_0187 - 6248226-6249226,6249296-6250148
Length = 617
Score = 52.8 bits (121), Expect = 3e-07
Identities = 35/88 (39%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Frame = +3
Query: 483 MDESYELYISSTSSDKVNATIRGNSFFGVRHGLETLSQLIVYDD---IRNNLLIVRDVTI 653
+DESY L S D +A I + +G GLET SQL ++ + I
Sbjct: 130 VDESYTL---SVLPDSGSADISAATPWGAIRGLETFSQLAWAGGGAASGGQPIVPSGIEI 186
Query: 654 KDRPVYPYRGILLDTARNFYSIESIKRT 737
DRP + +RGILLDTARNFY + I T
Sbjct: 187 SDRPHFTHRGILLDTARNFYPVRDILHT 214
>06_01_0970 -
7490884-7491013,7491297-7491574,7491683-7491952,
7492298-7492714,7492861-7492937,7493071-7493127,
7493490-7493610,7494240-7494308
Length = 472
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +3
Query: 489 ESYELYISSTSSDKVNATIRGNSFFGVRHGLETLSQLIVYDDIRNN 626
ES+ L + S D+V A I N FG+ H S YDD+ N+
Sbjct: 346 ESFNLPLYGPSIDEVKAVIALNKLFGIDHIQLFESNWDPYDDMEND 391
>06_03_0627 +
22903346-22903523,22906010-22906152,22906235-22906618,
22906980-22907069,22907147-22907320,22907414-22907551,
22907719-22907856,22907958-22908019,22908240-22908513
Length = 526
Score = 29.5 bits (63), Expect = 2.9
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = +3
Query: 405 SAKAAGKSVTVYLVNDNPYIREFSLDMDESYELYISSTSSDKVNATIRGNSFFGVRHGL 581
SAK+ K V + L +P+I D+D++ EL I +K A + G+ F V+ G+
Sbjct: 282 SAKSNLKPVALELGGKSPFIVFDDADLDKAVELAIGGNFFNKGEACVAGSRVF-VQEGI 339
>11_02_0045 - 7705728-7707581
Length = 617
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +3
Query: 54 ICIYSVFIIIECGIPTAAEEHSLWRWTCENNRCTKIRNEPENKEPVLSLEACKMFCDD 227
+C +++ ++ GIP E + L RWT N + + P N + L+ C C D
Sbjct: 524 LCRHALRVLTAIGIPVLPENYILKRWT-RNAKNNILSQVPANTKGSLAWR-CNDLCRD 579
>05_06_0277 +
26885621-26886064,26886148-26886317,26887038-26887941,
26888544-26888575,26888862-26888928,26889116-26889173,
26889329-26889421,26890366-26890480,26890847-26890894,
26891012-26891057,26891161-26891231,26891865-26891870,
26891991-26892038,26892439-26892488,26892892-26893154
Length = 804
Score = 28.3 bits (60), Expect = 6.7
Identities = 22/102 (21%), Positives = 45/102 (44%), Gaps = 6/102 (5%)
Frame = +1
Query: 127 DGRAKTIDARRSGTSRRIRSLSSVWKPARCSVTIMVSSGRNQRSRQIWVTSSP------R 288
DG + + ++ + T+ + + + A V ++ +SG+ + + W +S
Sbjct: 159 DGTSSSDESSSTTTTPASKDVEASAGAASTVVVVVAASGKPEAEEEGWGMASAVERREHS 218
Query: 289 LI*TPSTFRSPSKERATTSSQRLPTGLRHWFPVPCLKASRRR 414
S RSP+++R + +R P R P P ++ RRR
Sbjct: 219 RRSGRSRSRSPARDRGSPPRRRSPPARRERSPAPRSRSPRRR 260
>03_06_0708 - 35667547-35667578,35667741-35667794,35667828-35668995
Length = 417
Score = 28.3 bits (60), Expect = 6.7
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = -3
Query: 183 PYSPARS*SSCIYCFRTSISTMSALRLPSESRI--XXXXXRCKYKLLEATSFTGALNASV 10
P P S S Y F ++ + SALRLPS + K L + F AL AS
Sbjct: 38 PSLPPLSDPSFAYAFPLALKSSSALRLPSAAAAADSLHALAAKCGFLSSPFFASALVASY 97
Query: 9 PSC 1
+C
Sbjct: 98 GAC 100
>01_01_1060 -
8363272-8365912,8366375-8366443,8366479-8366843,
8367403-8367550,8367630-8367873,8368105-8368407,
8368639-8368851,8368927-8369002,8369533-8369561,
8369610-8369984,8371784-8371927,8374053-8374086
Length = 1546
Score = 28.3 bits (60), Expect = 6.7
Identities = 20/58 (34%), Positives = 28/58 (48%)
Frame = +3
Query: 300 TIDIQITKQGKSDDLLTAAADRFKTLVSSSVPKGFSAKAAGKSVTVYLVNDNPYIREF 473
T D +T GKS + AAAD +T++ SS+P + TVY NP R +
Sbjct: 722 TNDTWLTDSGKSS--IMAAADELETMLPSSIP--YMTARVFTMDTVYNFTVNPRDRHW 775
>02_01_0458 +
3291563-3291733,3292082-3292769,3292847-3293363,
3293438-3293637,3294137-3294372,3294469-3295302
Length = 881
Score = 27.9 bits (59), Expect = 8.9
Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 4/119 (3%)
Frame = +3
Query: 255 IETNLGNFLSKINMNTIDIQITKQGK--SDDLLTAAADRFK--TLVSSSVPKGFSAKAAG 422
+E G ++ + ++ I K G +D A+ FK TL+ S KG K
Sbjct: 603 LEAACGELKHRLFLKLLEA-ILKTGNRLNDGTFRGGANAFKLDTLLKLSDVKGADGKTTL 661
Query: 423 KSVTVYLVNDNPYIREFSLDMDESYELYISSTSSDKVNATIRGNSFFGVRHGLETLSQL 599
V + + +RE L M+ STS D N +++ + + GL+ +S L
Sbjct: 662 LHFVVQEIIRSEGVREARLAMENGRSPPFPSTSDDNSNESLQEDGNYYSNLGLKIVSGL 720
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,424,878
Number of Sequences: 37544
Number of extensions: 451723
Number of successful extensions: 1252
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1249
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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