Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6388
         (788 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    29   0.76 
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    27   2.3  
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    27   4.0  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   5.4  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    26   5.4  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    26   5.4  
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar...    26   7.1  
SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit |Schizos...    26   7.1  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 29/128 (22%), Positives = 47/128 (36%)
 Frame = -3

Query: 759 PSPKATCRLTSFPSRTASSDNCGDWCTVLPSEISIAVFGHNIGSSSDVLCVFRFLFTLKG 580
           PS  ++  LTS    T+S  +     +   S +S +       SSS    +     +   
Sbjct: 222 PSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSS 281

Query: 579 QAAAPGLSLSECRSSALSPLVGPYFFETGSPSPLRYESGLMLAASSEEFEDKSDDRSSIF 400
              +   ++S   SS+ SP        + S S   + S L  ++ S      S   SS  
Sbjct: 282 SPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSS 341

Query: 399 TVSWLPSS 376
           T+S   SS
Sbjct: 342 TISSSSSS 349


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +2

Query: 533 AEDRHSDRDSPGAAACPLRVNKKRKTQSTSEEEPILCPKTAIEISEGSTV 682
           +E   SD  S   +       KKRK +  SEE P    K + + +E  TV
Sbjct: 216 SESGDSDSSSDSESESSSEDEKKRKAEPASEERPAKITKPSQDSNETCTV 265


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 614 STSEEEPILCPKTAIEISEGS 676
           ST EEE ++   T+++ISEG+
Sbjct: 2   STMEEEKVISKSTSVDISEGT 22


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +3

Query: 594 IKNEKRKAHRKKNQYYVRKRLSKFQKEVQ 680
           + N +++  R  NQ  +R + +KF+KEV+
Sbjct: 582 LPNPQKRQKRLSNQVELRNQWAKFEKEVE 610


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 19/68 (27%), Positives = 29/68 (42%)
 Frame = -3

Query: 486 SPLRYESGLMLAASSEEFEDKSDDRSSIFTVSWLPSSR*KDSLLPRRDPMHTARRRRPDN 307
           S + Y   L +  S  E E+        F       SR +++LLPR +P+     R+P  
Sbjct: 47  SQIEYLQALQMQQSLSESENYLQPNFFPFQSGPFSKSRRENTLLPRLNPLAPIGARQP-- 104

Query: 306 IEQNPHVP 283
              NP +P
Sbjct: 105 ---NPSIP 109


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -3

Query: 489 PSPLRYESGLMLAASSEEFEDKSDDRSSIFTVSWLPSS 376
           PSP++  +   ++ + EE  D S   SS FT+S+ PS+
Sbjct: 513 PSPIKSRNNNQMSFAMEEEADVSQPSSSSFTLSF-PSA 549


>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
           Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 598 KTKNAKHIGRRTNIMSENGYRNFRRK 675
           +T+N     RRT  + ENG+RN R+K
Sbjct: 94  RTRNRSQTQRRT--LLENGFRNSRKK 117


>SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 122

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = -3

Query: 657 IAVFGHNIGSSSDVLCVFRFLFTLKGQAAAPGLSLSECRSSALSPLVGPY 508
           +  +  N   S  + CV +F+ T+  + A     L    S   SP+V PY
Sbjct: 50  VGTYPFNSFLSGFISCVGQFVITVGFRMALTQQELQSSSSKKKSPVVSPY 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,331,663
Number of Sequences: 5004
Number of extensions: 72066
Number of successful extensions: 252
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)