Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6388
(788 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0491 - 22680011-22680125,22680210-22680307,22680392-226804... 32 0.45
03_02_0999 - 13105030-13105434,13105716-13105850,13105933-131061... 31 1.0
04_04_1129 - 31107892-31110246 29 5.6
06_03_1168 - 28114656-28114721,28114800-28114889,28115139-281168... 28 7.4
11_01_0752 - 6327269-6327764,6328571-6328839 28 9.7
09_04_0318 - 16620177-16620582,16620686-16620765,16620873-166212... 28 9.7
08_02_1022 + 23707993-23708528,23708620-23708706,23708807-237088... 28 9.7
04_03_0204 + 12643435-12644001 28 9.7
>01_05_0491 -
22680011-22680125,22680210-22680307,22680392-22680472,
22680564-22680677,22680757-22680823,22680947-22681017,
22681099-22681236,22681324-22681530,22681630-22681773,
22681856-22682017,22682117-22682173,22682256-22682348,
22682425-22682542,22682678-22682817,22683031-22683590,
22683703-22683805
Length = 755
Score = 32.3 bits (70), Expect = 0.45
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = -3
Query: 321 RRPDNIEQNPHVPNLRDPCICADTRDILIKTKNSEIYLSVGLNRPIPASFLYKLYV 154
R D E N +P L DP +++LIK + ++ S+G RPI A +Y+ +
Sbjct: 333 RGVDIHENNSQLPGLNDPEAEKQQQELLIKCISEDLGFSIG--RPIAAYLIYRCLI 386
>03_02_0999 -
13105030-13105434,13105716-13105850,13105933-13106133,
13106374-13106673,13106764-13106964,13107246-13107410,
13107484-13107663,13108171-13108212,13108327-13108404
Length = 568
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/84 (21%), Positives = 35/84 (41%)
Frame = +2
Query: 491 EPVSKKYGPTRGERAEDRHSDRDSPGAAACPLRVNKKRKTQSTSEEEPILCPKTAIEISE 670
E +K+ G GE+ + + ++S + A KK+K S EEP + + +
Sbjct: 473 EKTTKEDGDQEGEKKKKKKKSKESEESPAADADGGKKKKKTSKESEEPPVATTEGEKKEK 532
Query: 671 GSTVHQSPQLSDDAVLEGNEVNRQ 742
Q ++D +E E ++
Sbjct: 533 KKKKKSDSQDAEDVAMETEESGKK 556
>04_04_1129 - 31107892-31110246
Length = 784
Score = 28.7 bits (61), Expect = 5.6
Identities = 19/68 (27%), Positives = 29/68 (42%)
Frame = -3
Query: 579 QAAAPGLSLSECRSSALSPLVGPYFFETGSPSPLRYESGLMLAASSEEFEDKSDDRSSIF 400
+AA PG + S+ PL P + LR+ SG L+A+ + D +
Sbjct: 64 RAAVPGADATILSGSSAHPLPRPAAAARLAALALRFRSGPSLSAALSALPSQPDPALLLL 123
Query: 399 TVSWLPSS 376
S LP+S
Sbjct: 124 AASSLPAS 131
>06_03_1168 -
28114656-28114721,28114800-28114889,28115139-28116877,
28117146-28117227,28117794-28117865,28119412-28119453,
28120352-28120401,28121253-28121372,28121635-28121707,
28121828-28122100,28122413-28122517,28122730-28122859,
28123106-28123356,28123787-28123993,28124185-28124455,
28124808-28124914
Length = 1225
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = -3
Query: 777 LHSVFMPSPKATCRLTSFPSRTAS-SDNCGDWCTVLPSEISIAVFGHNIGSSSD 619
L S+ M S TC + FP++ S D C+ L S FG ++G +
Sbjct: 621 LRSMAMASSSLTCSIPQFPAKWQSIKDKLRQLCSGLDSLCGSVGFGVDVGGDEE 674
>11_01_0752 - 6327269-6327764,6328571-6328839
Length = 254
Score = 27.9 bits (59), Expect = 9.7
Identities = 20/72 (27%), Positives = 26/72 (36%)
Frame = +2
Query: 479 NGEGEPVSKKYGPTRGERAEDRHSDRDSPGAAACPLRVNKKRKTQSTSEEEPILCPKTAI 658
+G G+P + PT GE R SP + P + S S + P
Sbjct: 37 DGGGKPSPRTSKPTEGESTTRRCRPTQSPSTSGAPAASSPSFSPASPSCPAKLRSPPPT- 95
Query: 659 EISEGSTVHQSP 694
E S VH SP
Sbjct: 96 -SGEPSAVHASP 106
>09_04_0318 -
16620177-16620582,16620686-16620765,16620873-16621213,
16621298-16621559
Length = 362
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +2
Query: 524 GERAEDRHSDRDSPGAAACPLRVNKKRKT--QSTSEEEPILCPKTAIEISE 670
G+R+ R SD D G+A LR++K++ + + +E L PK + +++
Sbjct: 159 GDRSCSRASDEDDGGSARKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAK 209
>08_02_1022 +
23707993-23708528,23708620-23708706,23708807-23708863,
23708955-23709261,23709545-23709631,23709720-23709767
Length = 373
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -1
Query: 635 LVLLPMCFAFFVFYLLSKDRLLLLGYPCQSADL 537
LVLL A Y+L +D LLL+G P A L
Sbjct: 30 LVLLMFAVALTPTYVLMEDLLLLIGQPADLASL 62
>04_03_0204 + 12643435-12644001
Length = 188
Score = 27.9 bits (59), Expect = 9.7
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1
Query: 359 CCLDAILCIPRAGGDRITS 303
CCL A+LC+PRA + +
Sbjct: 6 CCLVAVLCLPRASASPVAA 24
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,996,722
Number of Sequences: 37544
Number of extensions: 475016
Number of successful extensions: 1434
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1433
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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