Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6388
         (788 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077531-1|AAC64610.1|  374|Caenorhabditis elegans Hypothetical ...    32   0.41 
Z72516-3|CAA96688.2| 1322|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AY874871-1|AAX62732.1| 1322|Caenorhabditis elegans chitin syntha...    29   2.9  
Z81530-8|CAB04305.2|  329|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z68119-1|CAA92191.1|  523|Caenorhabditis elegans Hypothetical pr...    28   6.6  
M25479-1|AAA27993.1|  282|Caenorhabditis elegans collagen protein.     28   6.6  
Z68319-3|CAA92701.1|  339|Caenorhabditis elegans Hypothetical pr...    28   8.8  
U97011-2|AAB52325.2|  689|Caenorhabditis elegans Hypothetical pr...    28   8.8  
U39650-4|AAK39186.1|  944|Caenorhabditis elegans Apical junction...    28   8.8  
U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction...    28   8.8  
U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction...    28   8.8  
U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction...    28   8.8  

>AF077531-1|AAC64610.1|  374|Caenorhabditis elegans Hypothetical
           protein F13C5.2 protein.
          Length = 374

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +2

Query: 485 EGEPVSKKYGPTRGERAEDRHSDRDSPGAAACPLRVNKKRKTQSTSEEE 631
           EG   ++  G  RG R   R S     GA   P +  +K+K +S SE+E
Sbjct: 61  EGGESTRGGGTGRGGRGRPRGSKNSDGGAGGPPAKRGRKKKAKSESEDE 109


>Z72516-3|CAA96688.2| 1322|Caenorhabditis elegans Hypothetical protein
            T25G3.2 protein.
          Length = 1322

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +3

Query: 597  KNEKRKAHRKKNQYYVRKRLSKFQKEVQYTNRHSYLTT 710
            + EKR+   +   + + + + K QKE+Q  NR+ ++T+
Sbjct: 1063 EKEKREEETQTADFPIEENVEKTQKEIQKANRYVWMTS 1100


>AY874871-1|AAX62732.1| 1322|Caenorhabditis elegans chitin synthase 1
            protein.
          Length = 1322

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +3

Query: 597  KNEKRKAHRKKNQYYVRKRLSKFQKEVQYTNRHSYLTT 710
            + EKR+   +   + + + + K QKE+Q  NR+ ++T+
Sbjct: 1063 EKEKREEETQTADFPIEENVEKTQKEIQKANRYVWMTS 1100


>Z81530-8|CAB04305.2|  329|Caenorhabditis elegans Hypothetical
           protein F36D1.3 protein.
          Length = 329

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = -1

Query: 650 FSDIILVLLPMCFAFFVFYLLSKDRLLLLGYPCQSADLLLFPLSLGHTFSKRAHLL 483
           FS  I V+LP CF FF+   +     L   YP  +   ++F L L    ++  HLL
Sbjct: 151 FSLPITVILPCCFTFFMVPAVGHCTQLTAPYPMGA---VMFTLDLKVRINEYTHLL 203


>Z68119-1|CAA92191.1|  523|Caenorhabditis elegans Hypothetical
           protein T18D3.1 protein.
          Length = 523

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 25/93 (26%), Positives = 41/93 (44%)
 Frame = +3

Query: 402 KSKNDRPIYLRILQTTLPTSARTRTAMEKVSPFRKSMAQREGKEQKIGTLTGIAQEQQPV 581
           K K+D P       T+  +S++  T  E+ +   K   + E K +K     G  +E++P 
Sbjct: 409 KDKHDIPSTSSAASTSSSSSSKHETKEERKARKEKERERAEKKAKK--EKDGHREEEKP- 465

Query: 582 L*E*IKNEKRKAHRKKNQYYVRKRLSKFQKEVQ 680
                  +K K H  + +   RKR  K +KE Q
Sbjct: 466 ------KKKDKKHETEEERAERKRKEKKEKERQ 492


>M25479-1|AAA27993.1|  282|Caenorhabditis elegans collagen protein.
          Length = 282

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +2

Query: 512 GPTRGERAEDRHSDRDSPGAAACP 583
           GPT G+       D   PGAA CP
Sbjct: 168 GPTGGQGGPGEQGDAGRPGAAGCP 191


>Z68319-3|CAA92701.1|  339|Caenorhabditis elegans Hypothetical
           protein T23G7.3 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 23/75 (30%), Positives = 38/75 (50%)
 Frame = +3

Query: 465 RTRTAMEKVSPFRKSMAQREGKEQKIGTLTGIAQEQQPVL*E*IKNEKRKAHRKKNQYYV 644
           + R   EK    R    QR+ KE+ + T+  I + +Q V  E I  E  +A RK+ +   
Sbjct: 242 KARRKAEKKERKRLRREQRD-KEETLETVETILEVKQEVKEEIIDEEFDEAERKRLK-KE 299

Query: 645 RKRLSKFQKEVQYTN 689
           +KRL + +++ Q  N
Sbjct: 300 KKRLKRLREQQQPEN 314


>U97011-2|AAB52325.2|  689|Caenorhabditis elegans Hypothetical
           protein F31F7.2 protein.
          Length = 689

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +3

Query: 603 EKRKAHRKKNQYYVRKRLSKFQKEVQYTNRHS 698
           E  +  RK+N+Y+  +  ++ QK++ Y  +H+
Sbjct: 314 ESERQLRKQNEYFTSQLHTEMQKQITYGEKHA 345


>U39650-4|AAK39186.1|  944|Caenorhabditis elegans Apical junction
           molecule protein1, isoform b protein.
          Length = 944

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 603 EKRKAHRKKNQYYVRKRLSKFQKEVQYTNRHSYLTT 710
           EK   +RKKN     + L+K  + + YT R   +TT
Sbjct: 753 EKEAMNRKKNHLLSSETLAKLTQPMYYTTREPEVTT 788


>U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction
           molecule protein1, isoform c protein.
          Length = 1148

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 603 EKRKAHRKKNQYYVRKRLSKFQKEVQYTNRHSYLTT 710
           EK   +RKKN     + L+K  + + YT R   +TT
Sbjct: 753 EKEAMNRKKNHLLSSETLAKLTQPMYYTTREPEVTT 788


>U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction
           molecule protein1, isoform d protein.
          Length = 1439

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 603 EKRKAHRKKNQYYVRKRLSKFQKEVQYTNRHSYLTT 710
           EK   +RKKN     + L+K  + + YT R   +TT
Sbjct: 753 EKEAMNRKKNHLLSSETLAKLTQPMYYTTREPEVTT 788


>U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction
           molecule protein1, isoform a protein.
          Length = 1480

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 603 EKRKAHRKKNQYYVRKRLSKFQKEVQYTNRHSYLTT 710
           EK   +RKKN     + L+K  + + YT R   +TT
Sbjct: 753 EKEAMNRKKNHLLSSETLAKLTQPMYYTTREPEVTT 788


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,750,035
Number of Sequences: 27780
Number of extensions: 415382
Number of successful extensions: 1261
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1260
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)