Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6386
(708 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0116 - 26595570-26596607,26596964-26598353,26599386-265999... 32 0.51
11_06_0344 + 22540436-22540737,22541304-22543545 31 1.2
01_05_0536 - 23011618-23011635,23011871-23012052,23012160-230123... 30 1.6
03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,324... 29 2.7
06_03_0077 + 16284106-16284128,16284552-16284795,16285490-162855... 29 3.6
02_04_0546 - 23782400-23782599,23782744-23782830,23782923-237834... 29 3.6
03_02_0639 - 10047105-10047204,10047315-10047495,10049375-100494... 29 4.8
06_03_0156 + 17332048-17333550,17334195-17334362,17334715-17335089 28 6.3
05_05_0079 + 22239238-22239395,22240837-22240877,22240955-222410... 28 8.4
05_03_0402 + 13533055-13533501 28 8.4
01_05_0461 + 22446797-22447050,22447171-22447288,22447895-224482... 28 8.4
>01_06_0116 -
26595570-26596607,26596964-26598353,26599386-26599923,
26600562-26601453
Length = 1285
Score = 31.9 bits (69), Expect = 0.51
Identities = 38/139 (27%), Positives = 56/139 (40%), Gaps = 6/139 (4%)
Frame = +1
Query: 208 ERTDADVVRDALLAYMCHDVPLPCTHKANHEKP----KLTIDKRHRLHESKTGSRNLLDV 375
E DVV D + +C D + K P KL R ESK SR ++ +
Sbjct: 82 EEMVVDVVSDRWNSGVCEDHLVEKRSKGEVFGPVDVDKLPEKSRGSGDESKRSSRRMVSM 141
Query: 376 DIDTLNMELDYINNQVDLNGDAGRKAREVIGKYYDLKDKKAPLDFDAQMEREKLLYY--P 549
D + + + + D GR RE G+Y D +D++ D + + +REK +
Sbjct: 142 DDRAEEVVSKSDSGKRRSDKDLGR--RESSGQYRDDRDRERERDREKERDREKEKEWERQ 199
Query: 550 AEIFGYRGHVRRRSHSEEK 606
E RG R R EK
Sbjct: 200 KERERERGRDRERDRDREK 218
>11_06_0344 + 22540436-22540737,22541304-22543545
Length = 847
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +3
Query: 189 CVIRDARTYRRGCRTGCPSCIY 254
C+IR ART RR C C C Y
Sbjct: 319 CIIRPARTRRRACDCECNPCSY 340
>01_05_0536 -
23011618-23011635,23011871-23012052,23012160-23012396,
23012480-23012593,23012806-23013025,23013143-23013229
Length = 285
Score = 30.3 bits (65), Expect = 1.6
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Frame = +1
Query: 256 CHDVPLPCTHKANHEKPKLTIDKRHRLHESKTGSRNLLDVDIDTLNMELDYINNQVDLNG 435
CHD P A+H P + D + + + N+L DID + + Y++ + G
Sbjct: 85 CHD---PREEDADHPAPPMGRDSDDIFASTNSDNMNMLIGDIDEDSDDDGYVDEETTCPG 141
Query: 436 D--AGRKAREVIGKYYDLKDKK 495
+ +E++ K+ + DKK
Sbjct: 142 QNFTKEQEKEIMRKWLETYDKK 163
>03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,
3242494-3242836,3244138-3248540,3248928-3249107,
3249108-3250892,3251055-3252173
Length = 2727
Score = 29.5 bits (63), Expect = 2.7
Identities = 23/118 (19%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Frame = +1
Query: 286 KANHEKPKLTIDKRHRLHESKTGSRNLLDVDIDTLNMEL-DYINNQVDLNGDAGRKAREV 462
++NH + + + LH + D++ N +L D NN + L+ D + ++
Sbjct: 792 RSNHMQKEAALRALENLHSQSQEEVKQMARDVEHSNKKLSDLENNNLKLH-DLSQGLKKT 850
Query: 463 IGKYYDLKDKKAPLDFDAQMEREKLLYYPAEIFGYRGHVRRRSHSEEKILDADFNFSN 636
+ + +KD Q EK+ Y A++ R + + + ++LD + N
Sbjct: 851 VAELNSMKDSAL---LQQQKSSEKVSYLEAQVLVVRSEMEKMV-QKTQMLDQELEHKN 904
>06_03_0077 +
16284106-16284128,16284552-16284795,16285490-16285591,
16286347-16287057
Length = 359
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +3
Query: 255 VPRCPFAVHA-QSQSRKTKTDHRQKAQTTRKQNRKQKPFRCRHRYFEHGTGLYKQSGGFK 431
+P P A A +++S + DH KA + ++ PF H Y E G+ K G +
Sbjct: 36 LPVLPLAPSASRTKSPRLVLDHLAKAYRVLETTAQEAPFELNHLYVEMGSAGDK---GRR 92
Query: 432 RRRG 443
RR G
Sbjct: 93 RRSG 96
>02_04_0546 -
23782400-23782599,23782744-23782830,23782923-23783442,
23783801-23784000,23784457-23784561,23784923-23785020,
23785168-23785271
Length = 437
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Frame = -3
Query: 640 RRSKN*NPRP-KFFLHYDYVVVRVPGIQISLLGNT---TTSPSPF 518
+R K P P K + H+D+VV+ +P + LGN +SPS F
Sbjct: 389 KRVKGSGPPPVKPWEHFDHVVMNLPASALQFLGNVFVLLSSPSSF 433
>03_02_0639 -
10047105-10047204,10047315-10047495,10049375-10049464,
10050718-10050796,10050887-10051024,10051897-10051977,
10052079-10052264,10052366-10052458,10052537-10052603,
10052709-10052798,10052909-10053441
Length = 545
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 436 DAGRKAREVIGKYYDLKDKKAPLDF 510
+A A+ V+GKYY +K APL F
Sbjct: 395 EATEAAKPVLGKYYKEPEKSAPLPF 419
>06_03_0156 + 17332048-17333550,17334195-17334362,17334715-17335089
Length = 681
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = +1
Query: 340 ESKTGSRNLLDVDIDTLNMELDYINNQVDLNGDAGRKAREVIGKYYDLKDKKAPLDFDAQ 519
E S + L ++D L+ +LD + D NG+ G + + I D D+D +
Sbjct: 139 EDGAPSESDLAAELDGLDSDLDEFLEEEDENGEDGAEMKADIDAKIDGFSSDWDSDWDEE 198
Query: 520 MEREK 534
ME E+
Sbjct: 199 MEDEE 203
>05_05_0079 +
22239238-22239395,22240837-22240877,22240955-22241033,
22241570-22241656,22241749-22241837,22241933-22242004,
22242094-22242186,22242339-22242427
Length = 235
Score = 27.9 bits (59), Expect = 8.4
Identities = 8/23 (34%), Positives = 11/23 (47%)
Frame = -3
Query: 358 CFLFCFRVVCAFCLWSVLVFRDW 290
C + R VC CLW + + W
Sbjct: 213 CLVLKLRAVCELCLWEIPRYEQW 235
>05_03_0402 + 13533055-13533501
Length = 148
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 328 AFCLWSVLVFRDWLCACTAKGH 263
A +W+V FR++LC CT H
Sbjct: 86 ALLMWNVPKFRNYLCGCTTGIH 107
>01_05_0461 +
22446797-22447050,22447171-22447288,22447895-22448217,
22448908-22449056,22449324-22449463,22449606-22449757,
22449862-22450021,22450071-22450088
Length = 437
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Frame = +1
Query: 100 TPSTKKSTIKQGNRLESHPA--IKELVSKLSN----VLFETQER 213
TPS K T+ + +R +PA + E+ LS+ VLFE++ER
Sbjct: 377 TPSENKGTLDESDRFLMNPADFVGEVFGNLSSFSHIVLFESEER 420
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,226,729
Number of Sequences: 37544
Number of extensions: 403540
Number of successful extensions: 1198
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1198
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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