Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6384
(713 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U50071-6|AAQ91911.1| 1004|Caenorhabditis elegans Uncoordinated p... 31 1.1
U50071-5|AAA93443.1| 2039|Caenorhabditis elegans Uncoordinated p... 31 1.1
U50071-4|AAM75382.1| 1841|Caenorhabditis elegans Uncoordinated p... 31 1.1
U50071-3|AAA93444.1| 1867|Caenorhabditis elegans Uncoordinated p... 31 1.1
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 31 1.1
U39847-3|AAB41826.1| 1815|Caenorhabditis elegans AO49 ankyrin pr... 31 1.1
U39847-2|AAB41828.1| 1867|Caenorhabditis elegans AO66 ankyrin pr... 31 1.1
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr... 31 1.1
U21734-1|AAA85854.1| 1786|Caenorhabditis elegans UNC-44 protein. 31 1.1
U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical pr... 29 3.3
AF077536-3|ABS19474.1| 510|Caenorhabditis elegans Hypothetical ... 29 4.4
AF077536-2|AAK31410.2| 527|Caenorhabditis elegans Hypothetical ... 29 4.4
AF288374-1|AAK83056.1| 502|Caenorhabditis elegans nicotinic ace... 28 5.8
AC006708-21|AAF60421.3| 502|Caenorhabditis elegans Uncoordinate... 28 5.8
>U50071-6|AAQ91911.1| 1004|Caenorhabditis elegans Uncoordinated
protein 44, isoform g protein.
Length = 1004
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = -1
Query: 278 HLCCGYGLL-VEPFAIEGFGEDGE--HS*YTPRQKANKPVHQTNICLMLESNPRPNQE 114
H+ C +G L + F +E + GE + YTP +A + H + +LE+ PN++
Sbjct: 727 HVACHFGQLNMVKFLVENGADVGEKTRASYTPLHQAAQQGHNNCVRYLLENGASPNEQ 784
>U50071-5|AAA93443.1| 2039|Caenorhabditis elegans Uncoordinated
protein 44, isoform a protein.
Length = 2039
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = -1
Query: 278 HLCCGYGLL-VEPFAIEGFGEDGE--HS*YTPRQKANKPVHQTNICLMLESNPRPNQE 114
H+ C +G L + F +E + GE + YTP +A + H + +LE+ PN++
Sbjct: 727 HVACHFGQLNMVKFLVENGADVGEKTRASYTPLHQAAQQGHNNCVRYLLENGASPNEQ 784
>U50071-4|AAM75382.1| 1841|Caenorhabditis elegans Uncoordinated
protein 44, isoform e protein.
Length = 1841
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = -1
Query: 278 HLCCGYGLL-VEPFAIEGFGEDGE--HS*YTPRQKANKPVHQTNICLMLESNPRPNQE 114
H+ C +G L + F +E + GE + YTP +A + H + +LE+ PN++
Sbjct: 727 HVACHFGQLNMVKFLVENGADVGEKTRASYTPLHQAAQQGHNNCVRYLLENGASPNEQ 784
>U50071-3|AAA93444.1| 1867|Caenorhabditis elegans Uncoordinated
protein 44, isoform c protein.
Length = 1867
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = -1
Query: 278 HLCCGYGLL-VEPFAIEGFGEDGE--HS*YTPRQKANKPVHQTNICLMLESNPRPNQE 114
H+ C +G L + F +E + GE + YTP +A + H + +LE+ PN++
Sbjct: 727 HVACHFGQLNMVKFLVENGADVGEKTRASYTPLHQAAQQGHNNCVRYLLENGASPNEQ 784
>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
protein 44, isoform f protein.
Length = 6994
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = -1
Query: 278 HLCCGYGLL-VEPFAIEGFGEDGE--HS*YTPRQKANKPVHQTNICLMLESNPRPNQE 114
H+ C +G L + F +E + GE + YTP +A + H + +LE+ PN++
Sbjct: 727 HVACHFGQLNMVKFLVENGADVGEKTRASYTPLHQAAQQGHNNCVRYLLENGASPNEQ 784
>U39847-3|AAB41826.1| 1815|Caenorhabditis elegans AO49 ankyrin
protein.
Length = 1815
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = -1
Query: 278 HLCCGYGLL-VEPFAIEGFGEDGE--HS*YTPRQKANKPVHQTNICLMLESNPRPNQE 114
H+ C +G L + F +E + GE + YTP +A + H + +LE+ PN++
Sbjct: 727 HVACHFGQLNMVKFLVENGADVGEKTRASYTPLHQAAQQGHNNCVRYLLENGASPNEQ 784
>U39847-2|AAB41828.1| 1867|Caenorhabditis elegans AO66 ankyrin
protein.
Length = 1867
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = -1
Query: 278 HLCCGYGLL-VEPFAIEGFGEDGE--HS*YTPRQKANKPVHQTNICLMLESNPRPNQE 114
H+ C +G L + F +E + GE + YTP +A + H + +LE+ PN++
Sbjct: 727 HVACHFGQLNMVKFLVENGADVGEKTRASYTPLHQAAQQGHNNCVRYLLENGASPNEQ 784
>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
protein.
Length = 6994
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = -1
Query: 278 HLCCGYGLL-VEPFAIEGFGEDGE--HS*YTPRQKANKPVHQTNICLMLESNPRPNQE 114
H+ C +G L + F +E + GE + YTP +A + H + +LE+ PN++
Sbjct: 727 HVACHFGQLNMVKFLVENGADVGEKTRASYTPLHQAAQQGHNNCVRYLLENGASPNEQ 784
>U21734-1|AAA85854.1| 1786|Caenorhabditis elegans UNC-44 protein.
Length = 1786
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = -1
Query: 278 HLCCGYGLL-VEPFAIEGFGEDGE--HS*YTPRQKANKPVHQTNICLMLESNPRPNQE 114
H+ C +G L + F +E + GE + YTP +A + H + +LE+ PN++
Sbjct: 727 HVACHFGQLNMVKFLVENGADVGEKTRASYTPLHQAAQQGHNNCVRYLLENGASPNEQ 784
>U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical
protein M03A8.2 protein.
Length = 2275
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = -2
Query: 310 PLQEQCFGDTTTCAVAMGYSLSPSQSKGSARTVNIANTHPDKKQTSLFIKRI 155
P + + F CA +G + K A VN A+ K +T +FIK I
Sbjct: 328 PAEPELFSAPIQCAEVVGDISCVFRIKNGANDVNYADVDESKVETDVFIKGI 379
>AF077536-3|ABS19474.1| 510|Caenorhabditis elegans Hypothetical
protein C16A11.4b protein.
Length = 510
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Frame = -2
Query: 301 EQCFGDTTTCAVA-----MGYSLSPSQSKGSARTVNIANTHPDK 185
EQ FG +T A + YSLS + + GSA T N+A T P +
Sbjct: 265 EQSFGSASTLPNAEIEPNLQYSLSDTMTTGSASTWNMAATPPSE 308
>AF077536-2|AAK31410.2| 527|Caenorhabditis elegans Hypothetical
protein C16A11.4a protein.
Length = 527
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Frame = -2
Query: 301 EQCFGDTTTCAVA-----MGYSLSPSQSKGSARTVNIANTHPDK 185
EQ FG +T A + YSLS + + GSA T N+A T P +
Sbjct: 282 EQSFGSASTLPNAEIEPNLQYSLSDTMTTGSASTWNMAATPPSE 325
>AF288374-1|AAK83056.1| 502|Caenorhabditis elegans nicotinic
acetylcholine receptoralpha subunit protein.
Length = 502
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 503 LINYAFLCRPVTERARTLYITFKYK 429
+ +Y L RPV+E TL +TFK K
Sbjct: 35 IADYNKLVRPVSENGETLVVTFKLK 59
>AC006708-21|AAF60421.3| 502|Caenorhabditis elegans Uncoordinated
protein 63 protein.
Length = 502
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 503 LINYAFLCRPVTERARTLYITFKYK 429
+ +Y L RPV+E TL +TFK K
Sbjct: 35 IADYNKLVRPVSENGETLVVTFKLK 59
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,807,060
Number of Sequences: 27780
Number of extensions: 322774
Number of successful extensions: 677
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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