Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6381
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb...    29   0.78 
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    28   1.4  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    27   1.8  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    27   3.2  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    25   9.7  
SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces po...    25   9.7  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    25   9.7  

>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 18/57 (31%), Positives = 31/57 (54%)
 Frame = +1

Query: 112 RLLSIKFVIWKNASSKLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTLEFARDLSKQ 282
           RLL +  ++ KN+S  L SY  L+KA    N + ++ +    ++  T EFA  + K+
Sbjct: 363 RLLMLVALMMKNSSGILHSYAVLKKANAITNKELRIMMQHAMDLRST-EFAEAVLKE 418


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 24/111 (21%), Positives = 48/111 (43%), Gaps = 1/111 (0%)
 Frame = -2

Query: 545  PSSFNSCLGVTSGYKSSKIFKSSSVNLAAPFVPFMKSVLASALPICIRQSR-ISKTSFIL 369
            P + +S   + S       + +S  N+    +       +SA+P  +  S  I+ +S   
Sbjct: 690  PVASSSSSPIPSSSSLVSTYSASLSNITHSSLSLTAMSSSSAIPTSVNSSTLITASSSNT 749

Query: 368  LVSAA*RTQASFLACFFASRSEEIAIAVTCFERSLANSRVWATSSYLATAT 216
            L+S+   + A   +   ++ S  +  A    +  L NS   ATS YL++++
Sbjct: 750  LLSSITSSSAIVSSTTVSNISSNLPSATASSQSQLTNSSTLATSLYLSSSS 800


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 38/151 (25%), Positives = 65/151 (43%), Gaps = 2/151 (1%)
 Frame = -2

Query: 542  SSFNSCLGVTSGYKSSKIFKSSSVNLAAPFVPFMKSVLAS--ALPICIRQSRISKTSFIL 369
            SSF    G TS Y  +K   SSS  LA+        VL+S  A P     +  S ++   
Sbjct: 844  SSFFDASGFTSIYNGTKAGFSSSFALASNSESGASDVLSSTIAKPTFKFSTSNSGSTSYS 903

Query: 368  LVSAA*RTQASFLACFFASRSEEIAIAVTCFERSLANSRVWATSSYLATATF*SEFSSFP 189
            + S++ R + +       S S  I +  +  + SL +S V   SSY+A++   +  S+ P
Sbjct: 904  IPSSSSRNEGT------TSYSSNITVTSSTLKPSLTSS-VSTASSYIASSASSNTLSTEP 956

Query: 188  AFCRSRYDVSLLLAFFQITNFMLNNRHNLSN 96
                S   +S  ++     +  +    +LS+
Sbjct: 957  KTFSSSSTLSESISSINTNSLTVKPESSLSS 987


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 18/44 (40%), Positives = 23/44 (52%)
 Frame = -2

Query: 542 SSFNSCLGVTSGYKSSKIFKSSSVNLAAPFVPFMKSVLASALPI 411
           SSF      TS Y+ S+ FK SSV L +     +    AS+LPI
Sbjct: 440 SSFLIISTFTSSYEHSEPFKVSSVPLTSNNFSSISHSSASSLPI 483


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = +1

Query: 85  RIHQFDKL*RLLSIKFVIWKNASSKLTS-YRDLQKAGKELNSDQKVAVAKYDEVAQTLEF 261
           +IHQ D L   L  + + WKN    L   Y  L++   +L S  K    K     + ++ 
Sbjct: 459 QIHQNDDLIESLKNQILTWKNKYEALAKLYTQLRQEHLDLLSKYKQIQLKASSAQEAIDK 518

Query: 262 ARDLSKQV 285
              + +++
Sbjct: 519 KEKMEREM 526


>SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 293 IAVTCFERSLANSRVWATSSYLATATF*SEFSS 195
           IA++CF+ +    + W TS  + T  F S  SS
Sbjct: 87  IAISCFQTAAYIVQDWITSPIIRTLPFRSSSSS 119


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 320  KNKLKRKPGFVMQQRPTK*KKFYLF 394
            KN+ + K  F +Q+RP K  +++LF
Sbjct: 1008 KNQQRNKEKFRIQKRPNKKYRYHLF 1032


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,483,595
Number of Sequences: 5004
Number of extensions: 45210
Number of successful extensions: 134
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)