Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6381
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0386 + 5100249-5100562,5100877-5100927,5101201-5101204           31   0.81 
09_02_0513 - 10105746-10106438,10106523-10107040,10107156-101076...    29   4.3  
03_06_0054 + 31313348-31313560,31313662-31313856,31313933-313140...    28   7.6  

>04_01_0386 + 5100249-5100562,5100877-5100927,5101201-5101204
          Length = 122

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 17/71 (23%), Positives = 31/71 (43%)
 Frame = +1

Query: 415 GSADARTDFINGTNGAAKLTEDDLKILDDLYPEVTPKHELNEEGQSGFHLQITRAAEHLY 594
           GS D R       + A++   D +    ++ P +TP H +     +   +   R A HL 
Sbjct: 38  GSIDVRAGGAGDGSAASEYCHDAVAAAAEVIPLLTPLHAVPAAPAASDQVSGGRTARHLT 97

Query: 595 SIIDGKPKEVL 627
            ++ G  +E+L
Sbjct: 98  EVVAGGGREIL 108


>09_02_0513 -
           10105746-10106438,10106523-10107040,10107156-10107695,
           10107791-10108103
          Length = 687

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
 Frame = +1

Query: 346 VRYAAETNKIKEVLLILDCLMQMGSADARTDFINGTNGAAKLTEDDLKILDDLYPEVTPK 525
           + YAA ++ ++E++ +L   M         + +   + AAK+    L ++ D+  E    
Sbjct: 309 LHYAA-SDGVREIISMLIQSMPSAMYIPDKEGLTPLHVAAKMGH--LDVIQDMLKECPDS 365

Query: 526 HEL-NEEGQSGFHLQITRAAEHLYSIIDGKP 615
            EL + EG++  HL I R  E + S I G P
Sbjct: 366 AELVDNEGRNILHLAIERGHEPVVSYILGDP 396


>03_06_0054 +
           31313348-31313560,31313662-31313856,31313933-31314098,
           31314193-31314599
          Length = 326

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +1

Query: 385 LLILDCLMQMGSADARTDFINGT 453
           LL++  + Q+G++D RTD+ N T
Sbjct: 12  LLVVAAVAQLGASDLRTDYYNST 34


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,414,030
Number of Sequences: 37544
Number of extensions: 266158
Number of successful extensions: 617
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)