Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6381
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41549-3|AAA83283.2|  245|Caenorhabditis elegans Hypothetical pr...    31   0.96 
AL132848-5|CAB60389.2|  702|Caenorhabditis elegans Hypothetical ...    28   5.1  
AF016424-2|AAB65332.1|  720|Caenorhabditis elegans Peroxisome as...    28   5.1  
AB012224-1|BAA76440.1|  720|Caenorhabditis elegans Pex6p homolog...    28   5.1  
AB010968-1|BAA33544.1|  720|Caenorhabditis elegans PEX6 protein.       28   5.1  
Z69383-2|CAA93408.2|  318|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z83222-1|CAB05712.1|  410|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>U41549-3|AAA83283.2|  245|Caenorhabditis elegans Hypothetical
           protein F22F1.3 protein.
          Length = 245

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 15/23 (65%), Positives = 16/23 (69%)
 Frame = +1

Query: 40  QLLMQNLKSRPLRRIRIHQFDKL 108
           +LL  N KSR  RRIRIH  DKL
Sbjct: 127 RLLKPNAKSRITRRIRIHVIDKL 149


>AL132848-5|CAB60389.2|  702|Caenorhabditis elegans Hypothetical
           protein Y47H10A.1 protein.
          Length = 702

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +1

Query: 481 DLKILDDLYPEVTPKHELNEEGQSG-FHLQITRAAEHLYSIIDGKPKEVLGT 633
           +L + D+L+  V P  +   E  +G FH Q  R  E +  +ID +   V GT
Sbjct: 278 NLSLRDELFYRVVPPDQSFTEKYAGIFHFQFWRYGEWVDVVIDDRLPTVNGT 329


>AF016424-2|AAB65332.1|  720|Caenorhabditis elegans Peroxisome
           assembly factor protein6 protein.
          Length = 720

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
 Frame = -2

Query: 500 SSKIFKSSSVNLAAPFVPFM-KSVLASALPICI--------RQSRISKTSFILLVSAA*R 348
           S+ ++++S+V+ + PF  F+ K+ L S++   +         Q  ISK + +LLV+ A  
Sbjct: 209 STAVYETSAVSQSLPFSNFLLKNSLTSSMRTTVFRMTQIYSAQKTISKKALVLLVTGASG 268

Query: 347 TQASFLACFFASRSEEIAIAVTCFERSLANS 255
           +    ++  FAS +      V  +E    N+
Sbjct: 269 SGKRLMSRVFASETHRNFFEVDGYEMVCENA 299


>AB012224-1|BAA76440.1|  720|Caenorhabditis elegans Pex6p homolog
           protein.
          Length = 720

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
 Frame = -2

Query: 500 SSKIFKSSSVNLAAPFVPFM-KSVLASALPICI--------RQSRISKTSFILLVSAA*R 348
           S+ ++++S+V+ + PF  F+ K+ L S++   +         Q  ISK + +LLV+ A  
Sbjct: 209 STAVYETSAVSQSLPFSNFLLKNSLTSSMRTTVFRMTQIYSAQKTISKKALVLLVTGASG 268

Query: 347 TQASFLACFFASRSEEIAIAVTCFERSLANS 255
           +    ++  FAS +      V  +E    N+
Sbjct: 269 SGKRLMSRVFASETHRNFFEVDGYEMVCENA 299


>AB010968-1|BAA33544.1|  720|Caenorhabditis elegans PEX6 protein.
          Length = 720

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
 Frame = -2

Query: 500 SSKIFKSSSVNLAAPFVPFM-KSVLASALPICI--------RQSRISKTSFILLVSAA*R 348
           S+ ++++S+V+ + PF  F+ K+ L S++   +         Q  ISK + +LLV+ A  
Sbjct: 209 STAVYETSAVSQSLPFSNFLLKNSLTSSMRTTVFRMTQIYSAQKTISKKALVLLVTGASG 268

Query: 347 TQASFLACFFASRSEEIAIAVTCFERSLANS 255
           +    ++  FAS +      V  +E    N+
Sbjct: 269 SGKRLMSRVFASETHRNFFEVDGYEMVCENA 299


>Z69383-2|CAA93408.2|  318|Caenorhabditis elegans Hypothetical
           protein F13E9.5 protein.
          Length = 318

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 481 DLKILDDLYPEVTPKHELNEEGQSGFHLQITRAAEHLYSIIDGKPK 618
           +LK  DD +P+   K E N E     H  +T   +  ++   GKP+
Sbjct: 38  NLKKFDDAFPKPNKKKEANMEFGELMHKYLTMRPDGRFATWHGKPQ 83


>Z83222-1|CAB05712.1|  410|Caenorhabditis elegans Hypothetical
           protein E01B7.1 protein.
          Length = 410

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 121 SIKFVIWK-NASSKLTSYRDLQKAGKELNSDQKVAVAKYDEVAQ 249
           S KF  WK N ++    Y D +K  +E ++ Q V   KY+ + +
Sbjct: 74  SSKFARWKQNTANAALFYADFEKVVREASNLQSVLNIKYENLVR 117


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,632,963
Number of Sequences: 27780
Number of extensions: 249602
Number of successful extensions: 656
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)