Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6378
         (796 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1069 - 11060045-11060262,11060404-11060545,11060624-110607...    28   7.4  
02_04_0585 - 24088344-24089366,24089833-24090075,24090305-240906...    28   7.4  
07_03_0911 + 22537352-22537456,22537877-22538028,22538277-225383...    28   9.8  

>12_01_1069 -
           11060045-11060262,11060404-11060545,11060624-11060776,
           11060942-11061013,11062774-11063082,11063323-11063378,
           11066436-11066533,11066616-11066700,11066800-11067001,
           11067471-11067542,11069555-11069624,11071829-11072038,
           11072337-11072609,11073912-11074183,11075354-11075557
          Length = 811

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +1

Query: 541 EQRFESTAGSESRPTGED-PARN*EGWGLWEQNGSPISYLYTA 666
           +++ ++T   E+     D PA    GWG W  N S  ++ Y A
Sbjct: 739 KEKTQNTVWEENGEVANDEPAVQENGWGTWTPNASTSAWSYRA 781


>02_04_0585 -
           24088344-24089366,24089833-24090075,24090305-24090655,
           24090736-24090823,24091178-24091275,24091813-24092025,
           24092150-24092245,24093124-24093195,24093909-24094067
          Length = 780

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +1

Query: 49  QNFLGTVTGDIVNELPPEEFDVKIGETVAVSIASND 156
           +  L TV G I+N+L PE+FD+  G+ +   I + D
Sbjct: 205 ERVLKTVKG-ILNKLTPEKFDLLKGQLIEAGITTAD 239


>07_03_0911 +
           22537352-22537456,22537877-22538028,22538277-22538350,
           22538379-22538560,22539114-22539192,22539283-22539407,
           22539575-22539656,22539870-22539931,22540362-22540778
          Length = 425

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 540 LLGLDLGNSADNPLSALKSSITSQG 466
           +L +D G SAD P+S L S + + G
Sbjct: 344 ILSMDRGESADTPISGLASGLANLG 368


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,886,142
Number of Sequences: 37544
Number of extensions: 330506
Number of successful extensions: 619
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)