Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6375
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    30   0.31 
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c...    25   6.8  
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch...    25   9.0  

>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -3

Query: 205 EFKDIWTSL*TPVNDRIN*LLPYAED 128
           +F+   T L TP N+ IN L PYAED
Sbjct: 187 QFRQPITMLETPFNESINTLTPYAED 212


>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 436

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 417 RRKIFTVSMLASFIYLLRMMDV 352
           R KIF +S+L   +YLL  +D+
Sbjct: 266 RSKIFVISLLGYGVYLLAFLDL 287


>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 8/38 (21%), Positives = 18/38 (47%)
 Frame = +1

Query: 358 HHSKKVDK*REHGNSKYFPTSESKRFVEPRRRYLFMYM 471
           H    V     H N +++P      +++P+ R  F+++
Sbjct: 62  HPGSSVGLFESHENIRFYPIPSLPAYLQPKNRLQFLFL 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,682,101
Number of Sequences: 5004
Number of extensions: 54936
Number of successful extensions: 134
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)