Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6373
(611 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 156 2e-39
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 102 4e-23
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 97 2e-21
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 95 9e-21
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 81 2e-16
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 66 5e-12
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 62 8e-11
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 48 1e-06
SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces pomb... 29 0.53
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe... 28 0.93
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 28 1.2
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 27 1.6
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 27 2.1
SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyc... 27 2.1
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 26 4.9
SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|... 25 8.6
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 156 bits (379), Expect = 2e-39
Identities = 78/137 (56%), Positives = 96/137 (70%)
Frame = -3
Query: 606 ERSLHDAIMIVRRTIKNDAVVAGGGAVDMQISAHLRSHSLQLAGKEQLXXXXXXXXXXAI 427
ERSLHDAIMIV+ +KN+ VVAGGGA +M++S +LR +SL ++GK+Q I
Sbjct: 391 ERSLHDAIMIVKHALKNNLVVAGGGACEMELSKYLRDYSLTISGKQQNFIAAFARSLEVI 450
Query: 426 PRQLADNAGLDGTGLLNKLRQKHAAGEHTHGVDVISGEVVDNFAKCVWEPALVKLNAVSA 247
PRQL DNAG D T +LNKLR +HA GE GVD+ S V +NF K VWEP+ VK NA+ +
Sbjct: 451 PRQLCDNAGFDSTNILNKLRMQHAKGEMWAGVDMDSEGVANNFEKFVWEPSTVKSNAILS 510
Query: 246 ACEATAQILSVDETIKN 196
A EA ILSVDETIKN
Sbjct: 511 ATEAATLILSVDETIKN 527
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 102 bits (245), Expect = 4e-23
Identities = 49/133 (36%), Positives = 80/133 (60%)
Frame = -3
Query: 606 ERSLHDAIMIVRRTIKNDAVVAGGGAVDMQISAHLRSHSLQLAGKEQLXXXXXXXXXXAI 427
ERSLHDA+ ++R +K A++AGGG+ +++ + L H+ QL G+E + I
Sbjct: 390 ERSLHDALCVIRCLVKQRALIAGGGSPEIEAAQRLLEHARQLEGREAICIRAFSEALEII 449
Query: 426 PRQLADNAGLDGTGLLNKLRQKHAAGEHTHGVDVISGEVVDNFAKCVWEPALVKLNAVSA 247
P LA+NAGL+ ++ +LR +HA GE T G++V G V + + V +P LV ++A+
Sbjct: 450 PVTLAENAGLNAIQVVTELRSRHANGEKTAGINVRKGIVTNILEENVLQPLLVNISAIQL 509
Query: 246 ACEATAQILSVDE 208
A E T I+ +D+
Sbjct: 510 AAETTKMIMKIDD 522
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 97.1 bits (231), Expect = 2e-21
Identities = 56/148 (37%), Positives = 83/148 (56%), Gaps = 12/148 (8%)
Frame = -3
Query: 606 ERSLHDAIMIVRRTIKNDAVVAGGGAVDMQISAHLRSHSLQLAGKEQLXXXXXXXXXXAI 427
ERS+HD++ +V+RT+++ VV GGGAV+ +S +L + + L +EQL I
Sbjct: 394 ERSMHDSLSVVKRTLESGKVVPGGGAVETALSIYLENFATSLGSREQLAIAEFAQALLII 453
Query: 426 PRQLADNAGLDGTGLLNKLRQKHAA------------GEHTHGVDVISGEVVDNFAKCVW 283
PR LA NA D T L KLR HAA G +G+D+++G + DN V
Sbjct: 454 PRTLAVNAAKDSTELTAKLRAYHAASQNAEVTDVKKRGYKNYGLDLLNGVIRDNVKAGVL 513
Query: 282 EPALVKLNAVSAACEATAQILSVDETIK 199
EP++ KL ++ +A EA IL +D +IK
Sbjct: 514 EPSMSKLKSLKSAVEACIAILRIDTSIK 541
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 94.7 bits (225), Expect = 9e-21
Identities = 49/143 (34%), Positives = 71/143 (49%)
Frame = -3
Query: 606 ERSLHDAIMIVRRTIKNDAVVAGGGAVDMQISAHLRSHSLQLAGKEQLXXXXXXXXXXAI 427
ER+L DA+ + R + + GGGA +M +S L + + G Q I
Sbjct: 386 ERNLQDAMAVARNVFFHPKLSPGGGATEMAVSVRLAEKARSIEGVAQWPYRAVADAIEII 445
Query: 426 PRQLADNAGLDGTGLLNKLRQKHAAGEHTHGVDVISGEVVDNFAKCVWEPALVKLNAVSA 247
PR L N G + L +LR KHA G+H+ G+D +G VVD VWEP VKL ++
Sbjct: 446 PRTLVQNCGANPIKALTELRAKHAEGQHSFGIDGETGRVVDMHEYGVWEPEAVKLQSIKT 505
Query: 246 ACEATAQILSVDETIKNVKGGEE 178
A E+ +L VD+ + V+ E
Sbjct: 506 AIESACLLLRVDDIVSGVRKHSE 528
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 80.6 bits (190), Expect = 2e-16
Identities = 42/137 (30%), Positives = 70/137 (51%)
Frame = -3
Query: 609 TERSLHDAIMIVRRTIKNDAVVAGGGAVDMQISAHLRSHSLQLAGKEQLXXXXXXXXXXA 430
+ER++HDA+ ++ +T+ V GGG +M ++ + + GK+ +
Sbjct: 382 SERAIHDALAVLSQTVAESRVTLGGGCAEMLMAKAVEEAATHEPGKKAVAVSAFAKALSQ 441
Query: 429 IPRQLADNAGLDGTGLLNKLRQKHAAGEHTHGVDVISGEVVDNFAKCVWEPALVKLNAVS 250
+P LADNAG D + L+ +L+ H G T G+D+ GE+ D AK + E +K VS
Sbjct: 442 LPTILADNAGFDSSELVAQLKAAHYDGNDTMGLDMDEGEIADMRAKGILEALKLKQAVVS 501
Query: 249 AACEATAQILSVDETIK 199
+ E +L VD +K
Sbjct: 502 SGSEGAQLLLRVDTILK 518
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 65.7 bits (153), Expect = 5e-12
Identities = 41/144 (28%), Positives = 72/144 (50%), Gaps = 3/144 (2%)
Frame = -3
Query: 606 ERSLHDAIMIVRRTIKNDAVVAGGGAVDMQISAHLRSHSLQLAGKEQLXXXXXXXXXXAI 427
ER++ D + IV+ +K++ ++ G GA DMQ+ L S + G Q +
Sbjct: 389 ERAIDDGVNIVKALVKDNRLIFGAGASDMQLCIRLISVGEKTPGIYQHAIKQYGEAFEVV 448
Query: 426 PRQLADNAGLDGTGLLNKL-RQKHAAGEHTHGVDV--ISGEVVDNFAKCVWEPALVKLNA 256
PR +++NAGLD T +++KL H + GVDV + +D +++ L K +A
Sbjct: 449 PRTISENAGLDPTDVISKLYAAHHKENGESIGVDVECENDGTLDAKEAGIFDVLLAKKSA 508
Query: 255 VSAACEATAQILSVDETIKNVKGG 184
+ A E +L+VD+ + + G
Sbjct: 509 IRLATETVLTVLNVDQVVMSKPAG 532
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 61.7 bits (143), Expect = 8e-11
Identities = 36/136 (26%), Positives = 66/136 (48%), Gaps = 1/136 (0%)
Frame = -3
Query: 606 ERSLHDAIMIVRRTIKNDAVVAGGGAVDMQISAHLRSHSLQLAGKEQLXXXXXXXXXXAI 427
+R+LHDA+ +VR I+++ VV GGGA ++ S + + ++ G +Q I
Sbjct: 401 KRALHDALCVVRNLIRDNRVVYGGGAAEISCSLAVTKEAEKIPGIDQYSMGAFADALDTI 460
Query: 426 PRQLADNAGLDGTGLLNKLRQKHAAGEHTH-GVDVISGEVVDNFAKCVWEPALVKLNAVS 250
P LA+N+GL L ++ +H + G+D + D + V +P + K +
Sbjct: 461 PLALAENSGLSSIEALTAVKARHVKENKAYLGIDCLQTGSNDMRKQFVIDPLIGKKQQLL 520
Query: 249 AACEATAQILSVDETI 202
A + +L V++ I
Sbjct: 521 LATQLCRMVLKVNDII 536
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 48.0 bits (109), Expect = 1e-06
Identities = 28/133 (21%), Positives = 69/133 (51%), Gaps = 2/133 (1%)
Frame = -3
Query: 591 DAIMIVRRTIKNDAVVAGGGAVDMQISAHLRSH--SLQLAGKEQLXXXXXXXXXXAIPRQ 418
D + V+ ++++ ++ G GA ++ +AHLR+ + ++ GK ++ IP+
Sbjct: 392 DGLRAVKNAVEDNCLIVGAGAFEVACAAHLRNKFAAKEVKGKAKMGVYAYADALLIIPKT 451
Query: 417 LADNAGLDGTGLLNKLRQKHAAGEHTHGVDVISGEVVDNFAKCVWEPALVKLNAVSAACE 238
LA N+ D + L+++ + G + G+D+ +G D + +++ V + + +A
Sbjct: 452 LAANSSYDTQDAIVALQEEASEG-YKVGLDLKTGMPFDPEVEGIYDNYRVIRHMLHSATV 510
Query: 237 ATAQILSVDETIK 199
+ ++SVD+ ++
Sbjct: 511 IASNLISVDQILR 523
>SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 557
Score = 29.1 bits (62), Expect = 0.53
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +1
Query: 253 HGVKLDEGRLPHTLRKVIHHLSTDNVHTVRVLPSGVLLPQFIEESG 390
H +DEG LR VI+HL T +V T+R LL + I+ G
Sbjct: 305 HTFTIDEGL--DALRDVIYHLETYDVTTIRASTPMYLLSRKIKAQG 348
>SPBC16H5.11c |skb1|rmt5|type II protein arginine
N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 645
Score = 28.3 bits (60), Expect = 0.93
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = -1
Query: 317 ERW--WITLRSVCGSRPSSSLTP*VPPA-RPPL 228
E W W T+RS CG P + +PPA PP+
Sbjct: 174 ETWKMWDTIRSACGYHPRLKVALELPPACSPPI 206
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +1
Query: 316 STDNVHTVRVLPSGVLLPQFIEESGPVQACIVCQLTRDGLKRAGHCR 456
S + VHT LP+ L +F + C +C+ +R HCR
Sbjct: 37 SENVVHTTLKLPTSTLSREFWMKDERTNNCSLCETEFTLFRRKHHCR 83
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 27.5 bits (58), Expect = 1.6
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 1/97 (1%)
Frame = -3
Query: 591 DAIMIVRRTIKNDAVVAGGGAVDMQISAHLRSHSLQLAGKEQLXXXXXXXXXXAIPRQ-L 415
DA+ V+ + ++ V+ G G + A LR + +Q P Q +
Sbjct: 430 DALNAVKAAV-SEGVLPGAGT--SFVKASLRLGDIPTNNFDQKLGVEIVRKAITRPAQTI 486
Query: 414 ADNAGLDGTGLLNKLRQKHAAGEHTHGVDVISGEVVD 304
+NAGL+G ++ KL++ + E G D+ VD
Sbjct: 487 LENAGLEGNLIVGKLKELYGK-EFNIGYDIAKDRFVD 522
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 27.1 bits (57), Expect = 2.1
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = -1
Query: 353 LGSTRTVWTLSVERWWITLRSVC 285
L T TVW + WW+++ ++C
Sbjct: 1523 LFGTMTVWVAHLIYWWVSIMALC 1545
>SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 117
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -3
Query: 564 IKNDAVVAGG-GAVDMQISAHLRSHSLQLAGKE 469
+KN +V G +VDMQ++ HL++ + + G+E
Sbjct: 19 LKNGTIVHGTITSVDMQMNTHLKAVKMTVKGRE 51
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -1
Query: 281 SRPSSSLTP*VPPARPP 231
S PSSS TP PP PP
Sbjct: 3 SAPSSSTTPASPPTSPP 19
>SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 156
Score = 25.0 bits (52), Expect = 8.6
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = -3
Query: 414 ADNAGLDGTGLLNKLRQKHAAGEHTHGVDV---ISGEVVD 304
A +AG D +GLL LR K A +G V I EV D
Sbjct: 104 AFDAGFDASGLLGPLRSKRYAAVVENGKVVKVFIENEVTD 143
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,276,477
Number of Sequences: 5004
Number of extensions: 42322
Number of successful extensions: 139
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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