Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6372
(803 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 33 0.036
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni... 31 0.25
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 28 1.8
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos... 27 3.1
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 27 3.1
SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|ch... 27 4.1
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S... 27 4.1
SPBC1921.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 7.2
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 26 7.2
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 26 7.2
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 25 9.5
SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe... 25 9.5
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po... 25 9.5
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 33.5 bits (73), Expect = 0.036
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
Frame = -2
Query: 568 CAVLGAEAVRKDTLRGIAWRSSIWVVVNITRIFIRSIATVLFAVTEKTAFNASRVAASEE 389
CA EA D I + S W + T + RS++T ++ ++N S + EE
Sbjct: 1351 CASFAVEAKINDWSYYIDFGSESWERIRNTPLK-RSLSTTFYSFL--ISYNDSFIKKHEE 1407
Query: 388 AILTEWFFSV-----QERLYFTLLVLELTIFHSIFPIAGLFLNIEE 266
+LT WF S+ FT+L+L+ + + I + + IEE
Sbjct: 1408 KVLTVWFESLGALDEDHAAQFTILLLQKNLKNPILLNLPISVKIEE 1453
>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
Rad15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 772
Score = 30.7 bits (66), Expect = 0.25
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = -1
Query: 590 RVSRRGSLCRPRSRSSQEGHTARNRMAELYLGRCQYHKNFHQIHRHS 450
R + G++ R RS G R+A + + C++H N + HS
Sbjct: 121 RREKNGNVVDARCRSLTAGFVREQRLAGMDVPTCEFHDNLEDLEPHS 167
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 27.9 bits (59), Expect = 1.8
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 281 KQTCDWKDAVKNCKLKNKERKIKPLLYTEEPLCQ-DGFL 394
+Q K +KN K+KN ++KPLL TE CQ D FL
Sbjct: 149 EQLIQIKVCMKNEKMKNLMEQLKPLLQTE---CQFDKFL 184
>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -2
Query: 322 LTIFHSIFPIAGLFLNIEEQTGRATYSLYSRGSTLDDVATVV 197
L IF SI + G F + + TG+A + +S + +D V V+
Sbjct: 11 LQIFGSILFLLGFFPHKNDSTGKAMSNQFSPPAVIDQVVFVM 52
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -1
Query: 539 EGHTARNRMAELYLGRCQYHKNFHQIHRHSPFRRYRKDRV 420
EGH +NRM+E Y + NF + +P + K+ V
Sbjct: 682 EGHYLKNRMSERYKHLMNLNANFRLLLTGTPLQNNLKELV 721
>SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|chr
2|||Manual
Length = 257
Score = 26.6 bits (56), Expect = 4.1
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +3
Query: 30 VSLLWPRASCSPARLLMVTD 89
V+ +W R +CSP+RL +T+
Sbjct: 211 VTQVWERGTCSPSRLSFLTE 230
>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
Mde10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 512
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/31 (38%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Frame = +2
Query: 452 CGDG--SDENSCDIDNDPNRAPPCDSSQCVL 538
CG+G D CD D P CD C L
Sbjct: 318 CGNGIVEDGEECDCGEDCENNPCCDGKTCKL 348
>SPBC1921.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 117
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 236 IQAIRCPAGLFFDIEKQTCDWKDAVKN 316
++A+RCP L+ + QT WK K+
Sbjct: 32 VRALRCPIWLWPTYDAQTIPWKKKKKS 58
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 25.8 bits (54), Expect = 7.2
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Frame = +2
Query: 491 NDPNRAPPCDSSQCVLPD-CFCSEDGTVI---PGDLPARDVPQMITITFDDAINNNNIEL 658
+DP+ +PP SS PD FC+ T + D+ + + +TF D + + +
Sbjct: 142 SDPSSSPPPSSSLLKTPDNDFCARPETFVKSDTADIKLQIHQNNLVLTFLDTTTVSKVNI 201
Query: 659 YKEI 670
EI
Sbjct: 202 VLEI 205
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = -1
Query: 713 P*YRNRSGFCACR*ISLCTIQCCYC*SHH 627
P ++ ++ C C I LC I C+ +H
Sbjct: 1033 PIWKKKTYVCLCTTIGLCNIYLCFANENH 1061
>SPAC20G8.08c |fft1||fun thirty related protein
Fft1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = -1
Query: 539 EGHTARNRMAELYLGRCQYHKNFHQIHRHSPFRRYRKDRV 420
EGH +NRM+E Y NF + +P + K+ +
Sbjct: 544 EGHYLKNRMSERYKHLMNIPANFRLLITGTPLQNNLKELI 583
>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 248
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -1
Query: 389 SHLDRVVLQCTREALFYAPCS 327
S L++V L RE LFY CS
Sbjct: 198 SRLNQVSLSIDREGLFYGQCS 218
>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 558
Score = 25.4 bits (53), Expect = 9.5
Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 7/107 (6%)
Frame = +2
Query: 473 NSCDIDNDPNRAPPCDSSQCVLPDCFCSEDGTVIPGDLPARDVPQMITITF-------DD 631
NS D N N P QCV CS G G++P ++IT F D
Sbjct: 38 NSMDDFNLENLLRPL---QCVF---ICSTTGQ---GEMPLNMRERIITYRFNWASKKLDS 88
Query: 632 AINNNNIELYKEIFNGKRKNPNGCDIKATYFVSHKYTNYSAVQETHR 772
+ + + G ++P+G + Y+ +H Y+ +A++ R
Sbjct: 89 RLRQLGAQSFSSRGEGDEQHPDGVEGVFAYWCNHLYSQLAAIKTPSR 135
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,151,961
Number of Sequences: 5004
Number of extensions: 66210
Number of successful extensions: 210
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -