Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6371
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c... 42 1e-04
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy... 35 0.012
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo... 34 0.016
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce... 31 0.11
SPAC8E11.01c ||SPAC959.01|beta-fructofuranosidase|Schizosaccharo... 30 0.25
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc... 29 0.77
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|... 27 1.8
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|... 27 1.8
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|... 27 1.8
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 27 3.1
SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces p... 26 5.5
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 25 9.5
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 25 9.5
>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 554
Score = 41.5 bits (93), Expect = 1e-04
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +1
Query: 88 LYVYTTELFPTVARNMAMGASSTTTRAGSMLAPFFGELNVLASWLPPIVFG-LFPVLGIV 264
LY YT E+FP+ R A+G +++ R + +P L + P V G LF GI+
Sbjct: 481 LYAYTPEVFPSKVRGTAVGLAASANRILGIFSPVIAMRANLTTSAPIFVSGALFIFAGIL 540
Query: 265 ACYFLPETKGK 297
+F E +GK
Sbjct: 541 VVFFPYEPRGK 551
>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 34.7 bits (76), Expect = 0.012
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Frame = +1
Query: 91 YVYTTELFPTVARNMAMGASSTTTRAGSMLAP-FFGELNVLASWLPPI-VFGLFPVLGIV 264
++Y E+FP R A G S+ + G++LA F L + + + +F GI+
Sbjct: 470 FIYPAEVFPARVRGTAHGISAALGKCGAILASLLFNFLTSIIGYGNVMWIFCGCMWGGIL 529
Query: 265 ACYFLPETKGKQLDD 309
LPETKG+ D+
Sbjct: 530 FTLLLPETKGRDADE 544
>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 572
Score = 34.3 bits (75), Expect = 0.016
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = +1
Query: 91 YVYTTELFPTVARNMAMGASSTTTRAGSMLAP-FFGEL-NVLASWLPPIVFGLFPVLGIV 264
++Y E+FP R A G S+ + G++LA F L V+ +F GI+
Sbjct: 469 FIYPAEVFPARVRGTAHGVSAALGKCGAILASLLFNFLTGVIGYGNVMWIFCGCMWGGIL 528
Query: 265 ACYFLPETKGKQLDD 309
LPETKG+ D+
Sbjct: 529 FTLLLPETKGRDADE 543
>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 583
Score = 31.5 bits (68), Expect = 0.11
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Frame = +1
Query: 79 STFLYVYTTELFPTVARNMAMGASSTTTRAGSML-APFFGELNVLASW--LPPIVFGLFP 249
+T +V E+FP+ R + G + +AG++L A F +L + + + I FG
Sbjct: 475 NTTCFVIPAEVFPSRVRAFSHGICAACGKAGAILSALLFNKLTEVIGFGNVLWIFFGCM- 533
Query: 250 VLGIVACYFLPETKGKQLD 306
V G V LPET + D
Sbjct: 534 VAGAVVTLILPETANRDAD 552
>SPAC8E11.01c
||SPAC959.01|beta-fructofuranosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 30.3 bits (65), Expect = 0.25
Identities = 24/86 (27%), Positives = 36/86 (41%)
Frame = +2
Query: 158 PREPALCWHHSLAS*MYWLPGYHPLYSDCFQY*ESWPAISFQRRKGNS*TIIWTNLDLFK 337
PRE LC+ H + P+ Y +S PA R T+ WT+ +F
Sbjct: 307 PRELTLCYTHLNQETRGLVLRQRPVNLHHLYYPDSLPAPLLLNRVCEFPTV-WTSATVFY 365
Query: 338 ITIEIDKSIHKRNKHIFLYIKLATRP 415
+ + I KSI + FL + +T P
Sbjct: 366 LAVSIPKSIVLESPMEFLCLTWSTTP 391
>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 688
Score = 28.7 bits (61), Expect = 0.77
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -2
Query: 79 NASRFCVSSLRRGHANLLLYRS 14
+ASRFCV SL+R AN + RS
Sbjct: 579 SASRFCVESLKRQKANYQMSRS 600
>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
3|||Manual
Length = 418
Score = 27.5 bits (58), Expect = 1.8
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +1
Query: 220 LPPIVFGLFPVLGIVACYFLPETKGKQ--LDDHLD 318
L ++FGLF VLG+ +C + TKG D H+D
Sbjct: 263 LKHMLFGLFQVLGVQSCVVI-VTKGLMYLFDKHID 296
>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
3|||Manual
Length = 402
Score = 27.5 bits (58), Expect = 1.8
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +1
Query: 220 LPPIVFGLFPVLGIVACYFLPETKGKQ--LDDHLD 318
L ++FGLF VLG+ +C + TKG D H+D
Sbjct: 253 LKHMLFGLFQVLGVQSCVVI-VTKGLMYLFDKHID 286
>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 461
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = +2
Query: 77 VPHFYTCTLQSCSQRWLGIWPWALHPPPR 163
V F T L S Q WL W L P PR
Sbjct: 361 VTGFRTALLNSFEQDWLASMSWNLSPGPR 389
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 26.6 bits (56), Expect = 3.1
Identities = 18/67 (26%), Positives = 24/67 (35%)
Frame = -1
Query: 284 SGRK*QATIPSTGNSPNTMGGSQEASTFSSPKNGANIEPARVVVDEAPMAIFRATVGNSS 105
SG+ ST N P T SP +I V E R VG SS
Sbjct: 1062 SGKDKLLLTSSTPNKPTTFFMPANEEILGSPAKDYDIHDQSYSVHELHSENMRENVGQSS 1121
Query: 104 VVYTYKN 84
++Y ++
Sbjct: 1122 LIYNNRD 1128
>SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 25.8 bits (54), Expect = 5.5
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +2
Query: 350 IDKSIHKRNKHIFLYIKLATRPCFASETVIYY*FLHYLMDV--IIHINLPLQSLYLLKKP 523
++K I++RNKHI + R C+ + YL D ++H +L ++++L
Sbjct: 444 LEKHINRRNKHIHGVMSKGLRNCYILLFARILEGVLYLHDAMHLVHRDLKPRNIFLSSGV 503
Query: 524 H 526
H
Sbjct: 504 H 504
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +1
Query: 115 PTVARNMAMGASSTTTRAGSMLAPFFGELNVLASWLPPIVFGLFPVL 255
P + A GAS+ + L P + V+AS + PIVFG P++
Sbjct: 618 PLYSDPTASGASNNLQKYHRYLPP---KQAVIASVISPIVFGNVPII 661
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 533 HFDAVFLIDRVIEEVGLYV**HPLNS 456
H DA ++ R I E+G+Y PL+S
Sbjct: 374 HLDATTVLSRSISELGIYPAVDPLDS 399
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,785,864
Number of Sequences: 5004
Number of extensions: 60026
Number of successful extensions: 177
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -