Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6369
(724 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 31 0.17
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 27 2.7
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.7
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 27 3.6
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe... 27 3.6
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe... 26 6.3
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |... 26 6.3
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 26 6.3
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo... 25 8.3
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 25 8.3
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 8.3
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 25 8.3
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran... 25 8.3
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 31.1 bits (67), Expect = 0.17
Identities = 23/81 (28%), Positives = 42/81 (51%)
Frame = -1
Query: 244 TVSKSLFNDGLISSTITLTGMSTTSFLFARRLLSMSLIVLAWSMSSCSLDKFSTTFKGLS 65
T+S S + SST++ + MS++S + S S I + S SS S FS+T
Sbjct: 306 TISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTI--SSSSSSPSSSSFSSTTSSSK 363
Query: 64 SASGTLSGMEAARAASTNVVS 2
S+S S + ++ + S++ ++
Sbjct: 364 SSSSFSSTVSSSSSTSSSTLT 384
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 27.1 bits (57), Expect = 2.7
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +1
Query: 268 EIKRPLVDLRNPGPPQHQEHETQNPEHHEDA--EKIVSSVKNDINTAE 405
E +P D RN GP Q + + + PE H ++ E+ + + ++ N E
Sbjct: 148 EEPKPSGDFRNEGPKQCDDSKIEKPELHVNSKIEEPIHRIDSEHNEPE 195
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 27.1 bits (57), Expect = 2.7
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Frame = -1
Query: 253 ALQTVSKSLFNDGLISSTITLTGMSTTSFLFARRLLSMSLIVLAWSM-SSCSLDKFSTTF 77
A T+S +++ SST + T ++S + S S ++ S+ SS S S+
Sbjct: 125 AASTISGGIYSSTSASSTSSSTATPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVS 184
Query: 76 KGLSSASGTLSGMEAAR-AASTN 11
+S+SG++S +A +AS+N
Sbjct: 185 SSSASSSGSISSADAKTVSASSN 207
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 26.6 bits (56), Expect = 3.6
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +1
Query: 310 PQHQEHETQNPEHHEDAEKIVSSVKNDIN 396
P +++ T++ E HED + V +++D N
Sbjct: 24 PNNKKSRTRSTESHEDRQAKVQKIQSDFN 52
>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 299 IPGPRSIKSTKHRILNTTKMLKKSFLPSKMTLTQRK 406
+P P S+ HR LN K+ F P + T++K
Sbjct: 224 LPSPVSLSRYMHRSLNWKKLYDIGFAPFPLGSTEKK 259
>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 727
Score = 25.8 bits (54), Expect = 6.3
Identities = 15/56 (26%), Positives = 23/56 (41%)
Frame = +1
Query: 307 PPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQ 474
PP H ++ TQ HEDA+ S + + I R ++ G + EQ
Sbjct: 609 PPLHLKNTTQTNNAHEDAQSSNLSQNHSLFYERIPQRPSYRIEKQNKGIYEDENEQ 664
>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 25.8 bits (54), Expect = 6.3
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Frame = +1
Query: 367 IVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINELQASLQHFQENFGAQIQKL-N 543
++SS N + + A G +++ D + EQ+ L + E FG ++Q++
Sbjct: 1 MISSFSNGFWSKDYAT--GVKKLFDCLDNGVEENEQVKNLLKLYKEANEEFGEKLQEITK 58
Query: 544 ETLHFIKPADTIAAPSVEETQNKASFETIES 636
E L KP +T T NKA FE + S
Sbjct: 59 ECLKGKKPENT----EDGATSNKA-FEGLRS 84
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 25.8 bits (54), Expect = 6.3
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +1
Query: 466 TEQINELQASLQHFQENFGAQIQKLNETL 552
+ ++N+LQ ++ + F QI+KLN +
Sbjct: 111 SHEVNDLQTDRENLKHQFEDQIEKLNSEI 139
>SPBC244.02c |||U3 snoRNP-associated protein Utp6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 488
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +1
Query: 412 LRQGFQEVSDGIGKWYARTEQINELQASLQHFQENFGAQIQKLNETLHFIK 564
+ Q E+ D + K ++IN + + + F+E + KLN+ L +I+
Sbjct: 9 MEQSVPELEDLLEKNIFNRDEINNIIKTRRVFEEKLARRQVKLNDFLSYIQ 59
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.4 bits (53), Expect = 8.3
Identities = 20/80 (25%), Positives = 35/80 (43%)
Frame = -1
Query: 253 ALQTVSKSLFNDGLISSTITLTGMSTTSFLFARRLLSMSLIVLAWSMSSCSLDKFSTTFK 74
+LQT S + + +ISS++T T ST + + + + + S S D S+
Sbjct: 552 SLQTSSSLIISSPIISSSLTATSTSTPA--LTHSITPSNTSYTSSLIPSSSTDYSSSLIT 609
Query: 73 GLSSASGTLSGMEAARAAST 14
S+ + +S A ST
Sbjct: 610 VCSNVTSEISSTSLASLIST 629
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 25.4 bits (53), Expect = 8.3
Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Frame = +3
Query: 33 ASIPDKVPEAEDKPLNVVENLSSEQELIDQANTIKD----IDN----SLRANKKEVVDIP 188
A PD A + L++ +N+SS NTI + ID+ +L N +++ +
Sbjct: 431 ADTPDSYLAAPKERLSISDNMSSSSSQTATVNTISNYLNVIDSVREIALTVNDEKIYGLA 490
Query: 189 VKVIVEEIKPSLKSDLET 242
+ +++++ S + T
Sbjct: 491 ISLLIQKFSRKFDSRVST 508
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 25.4 bits (53), Expect = 8.3
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 302 PGPRSIKSTKHRILNTTKMLKKSFLPSKMTLTQRKSLFVKASRKCQTV 445
P + + K I +K++ + LP+ +T Q K LFVK+ C+ V
Sbjct: 39 PAVNTASALKSVISEESKIIVSN-LPTDVTEAQVKELFVKSIGPCKRV 85
>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
transcription factor Ams2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 697
Score = 25.4 bits (53), Expect = 8.3
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -1
Query: 352 RGVQDSVFRALDAAGARDFLNRLEAS*FPHFHPALQTVSK 233
R + S+FR L+ AG LNRL + H P +SK
Sbjct: 425 RKLSISIFRELENAGRHSPLNRLTSLDSTHSAPDPNHISK 464
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,602,608
Number of Sequences: 5004
Number of extensions: 49422
Number of successful extensions: 228
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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