Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6369
(724 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0374 + 43144861-43144998,43145695-43145794,43146499-431466... 33 0.30
05_01_0558 - 4880811-4880996,4881098-4881178,4881247-4881393,488... 31 0.93
05_01_0143 - 944169-947273 30 2.1
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277... 30 2.1
03_06_0204 + 32341756-32341843,32341943-32342025,32342690-323427... 29 2.8
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 29 2.8
02_01_0267 - 1766071-1766261,1766368-1766569,1766719-1766814,176... 29 4.9
02_02_0233 + 8105765-8107840 28 6.5
01_06_0749 - 31655348-31657339 28 6.5
10_08_0520 - 18495118-18498237 28 8.6
07_01_0279 + 2055310-2055541,2055916-2056235,2056734-2057213 28 8.6
06_03_1119 + 27760412-27760527,27760851-27761010,27761283-277614... 28 8.6
>01_07_0374 +
43144861-43144998,43145695-43145794,43146499-43146651,
43147383-43150081
Length = 1029
Score = 32.7 bits (71), Expect = 0.30
Identities = 16/66 (24%), Positives = 33/66 (50%)
Frame = +1
Query: 322 EHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINELQASLQ 501
++ T P ++A + +S ++ +I + GI K++ +QIN++Q +
Sbjct: 252 KNTTSAPIDKDNAREEISRLQKEILVMQTEKEFIKSSYESGIAKYWDLEKQINDMQEQVC 311
Query: 502 HFQENF 519
HFQ+ F
Sbjct: 312 HFQDKF 317
>05_01_0558 -
4880811-4880996,4881098-4881178,4881247-4881393,
4881985-4882029,4882370-4883134
Length = 407
Score = 31.1 bits (67), Expect = 0.93
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 277 RPLVDLRNPGPPQHQEHETQNPEHHEDAEK 366
RPL L +P PP Q ET+ E +++E+
Sbjct: 98 RPLPSLASPPPPTQQPQETEEQEQQQESEE 127
>05_01_0143 - 944169-947273
Length = 1034
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/56 (25%), Positives = 30/56 (53%)
Frame = +1
Query: 352 EDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINELQASLQHFQENF 519
E+A++ +S ++ +I + G+ K++ +QIN++Q + +FQE F
Sbjct: 130 ENAQEEISRLQKEILVLQTQKEFLKSSYESGMAKYWDLEKQINDMQEEVCYFQEEF 185
>04_04_1144 + 31222556-31222633,31223238-31227665,31227724-31227789,
31227790-31228014,31228097-31228255,31228393-31228551,
31228855-31229013,31229371-31229490,31229604-31229825
Length = 1871
Score = 29.9 bits (64), Expect = 2.1
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +1
Query: 343 EHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTE-QINELQASLQHFQENF 519
+H + E VSS+K + EI + ++VS +W A E ++EL+A Q+ E
Sbjct: 1679 QHVAELEVQVSSLKQQLQETEIHYKHKEEQVSLREVQWEADQEHSVSELKAQRQYAAE-L 1737
Query: 520 GAQIQKLNETLHFIK 564
QI L + L ++
Sbjct: 1738 EKQIGALTQQLQLVE 1752
>03_06_0204 +
32341756-32341843,32341943-32342025,32342690-32342765,
32342876-32342943,32343001-32343045,32343308-32343392,
32344270-32344385,32344497-32344580,32345394-32345540,
32345845-32345956,32346027-32346146,32346338-32346411
Length = 365
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = +1
Query: 316 HQEHETQNPEHH---EDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQIN 480
H+ + Q + H EDAEK+V SVK + E G +V G ++ +N
Sbjct: 152 HEHEDEQKKQEHTFNEDAEKMVKSVKQAMENGEGCRVYGVLDVQRVAGNFHISVHGLN 209
>01_06_0124 -
26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 29.5 bits (63), Expect = 2.8
Identities = 33/152 (21%), Positives = 71/152 (46%), Gaps = 4/152 (2%)
Frame = +1
Query: 262 NEEIKRPLVDLRNPGPPQHQEHETQNPEH--HEDAEKIVSSVKNDINTAEIALRQGFQEV 435
+ E+++ N G QE E + H +ED E + S+++ND+ T + +
Sbjct: 473 SSELQQLEASFENLGNDLEQELERISIMHKNNEDLELVNSNLQNDLATVQGQKNEAVAST 532
Query: 436 SDGIGKWYARTEQINELQASLQHFQENFGAQIQKLNE-TLHFIKPADTIAAPSVEETQ-N 609
+ K + +QI+ LQ ++++ + A+ NE T+H + T + +E+ Q
Sbjct: 533 LELGNKLEEKNQQISNLQEAVENLE---AAKTNMYNEVTVH--QEKCTFLSSQLEKAQLA 587
Query: 610 KASFETIESGLKSLETNFNSGLNQLSGRYSNC 705
+ +T+ S ++ ++ N N L++ + C
Sbjct: 588 EKEVQTLLSEIEKMK-NENLMLSRENDNLKAC 618
>02_01_0267 -
1766071-1766261,1766368-1766569,1766719-1766814,
1767414-1767560,1767635-1767800,1767907-1767973,
1772850-1772949,1773029-1773099,1773199-1773382,
1773784-1773929,1774484-1774663,1774737-1774824,
1775634-1775838,1775945-1776081,1776529-1776612,
1776718-1776894,1777050-1777194,1777642-1777763,
1777846-1778091,1778571-1778789,1779016-1779094,
1779178-1779257,1779291-1779320
Length = 1053
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/65 (29%), Positives = 37/65 (56%)
Frame = +3
Query: 51 VPEAEDKPLNVVENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPSLKS 230
+ A+ K L++ E S EQEL +++ D+ L+AN + + +K +EE+K +
Sbjct: 673 ISSADSKTLSL-EAESKEQELNSSKSSLDDLTAMLKANVDAINNFTIK--IEELKRQ-RD 728
Query: 231 DLETV 245
+L+T+
Sbjct: 729 NLKTL 733
>02_02_0233 + 8105765-8107840
Length = 691
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +1
Query: 343 EHHEDAEKIVSSVKNDINTAEIALRQ--GFQEVSDGIGKWYARTEQ 474
EH KI+ ++ D+ + ++LR + +D G W R EQ
Sbjct: 426 EHRSSTAKIIGFIRKDLTSGWVSLRSVADHRRFNDRRGHWTLRREQ 471
>01_06_0749 - 31655348-31657339
Length = 663
Score = 28.3 bits (60), Expect = 6.5
Identities = 17/80 (21%), Positives = 37/80 (46%)
Frame = -1
Query: 244 TVSKSLFNDGLISSTITLTGMSTTSFLFARRLLSMSLIVLAWSMSSCSLDKFSTTFKGLS 65
+++++LF++ + ++ +T FARR L + W M S+ TF +
Sbjct: 193 SLAENLFSEFMFRDVVS---WNTMIIAFARRSLPQRALEFFWMMEGWSVLPNEITFSSVI 249
Query: 64 SASGTLSGMEAARAASTNVV 5
A +++G E ++ V+
Sbjct: 250 YACTSINGHEHGKSIHAKVI 269
>10_08_0520 - 18495118-18498237
Length = 1039
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 385 NDINTAEIALRQGFQEVSDGIGKWYARTEQINELQASL 498
+D+N + + LR+G + + D + W A E NE A L
Sbjct: 476 SDLNKSRV-LRKGLEHIPDSVRLWKAVVELANEEDARL 512
>07_01_0279 + 2055310-2055541,2055916-2056235,2056734-2057213
Length = 343
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +3
Query: 18 LAARAASIPDKVPEAEDKPLNVVENLSSEQELIDQANTIK 137
LA AA++P VP+A +E+ S+ ++++ NT++
Sbjct: 207 LAVAAAAVPAPVPDATSSITGSLESDSAGDDVVEYMNTLQ 246
>06_03_1119 +
27760412-27760527,27760851-27761010,27761283-27761449,
27761525-27761629,27762097-27762864,27762942-27763131,
27763763-27763940,27764106-27764497
Length = 691
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +1
Query: 355 DAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINELQASLQHFQENFG 522
+ E I S++ +++ E+ALRQ G WY R +N+ A + F+ FG
Sbjct: 78 EPEAIKSAIDDELRVVEVALRQN----PKSYGAWYHRKWLLNQKLAPVD-FKCEFG 128
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,652,457
Number of Sequences: 37544
Number of extensions: 305101
Number of successful extensions: 1202
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1199
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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