Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6367
         (735 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.91 
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    27   3.7  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    27   3.7  
SPAC1782.03 |||microfibrillar-associated protein family protein|...    25   8.5  
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc...    25   8.5  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    25   8.5  
SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual    25   8.5  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 4   NLELRCLSSGANFRGEWHHSHGNTS 78
           N++ +C+    N+R E H  HGNT+
Sbjct: 419 NVDRKCVKKQMNYREESHTPHGNTT 443


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1158

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 185  EKFSGPVPRNNFVVGICNVLIFLNLLLGWVVE 90
            EK   P+ RNN V+G+ ++ +  N  +  + E
Sbjct: 970  EKCDNPIIRNNLVIGLADLTVCFNHFIDEISE 1001


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -1

Query: 339 LSIVKTATLQTETHYCFTAEIGRAVVPTRADSQEVTTST 223
           L +V     QTE    FT ++   V PT   S  VTT++
Sbjct: 10  LLLVTAVMAQTEYTPGFTTDVATTVTPTPLPSANVTTTS 48


>SPAC1782.03 |||microfibrillar-associated protein family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 29  VVPIFEVSGITHTATPVRLWARQPIQAINLKKSK 130
           + P+FE  GI+ T T        P+Q I+   S+
Sbjct: 54  ITPVFEKEGISETKTSSNFQNINPVQTIDNSASE 87


>SPAC328.08c |||tubulin specific chaperone cofactor C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 460 SLDSFNLGHSYTSVEYNESVLKSEKNI*SCIFQIQNC 570
           +L + N+G +      N++V  S K++ SC   I NC
Sbjct: 125 NLKNQNIGDNVIPYPNNKAVKVSAKSLRSCNISISNC 161


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 55  HHSHGNTS*AMGSTTHPSNKFKKIK 129
           HHSH N S  + +TT+  N F++ +
Sbjct: 484 HHSHSNHSMCLPNTTNDINIFEEFE 508


>SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 180

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +2

Query: 536 TFDLAYFK--YRTVVIYPSSFLFYQSNQFSRLKNLTI 640
           T  L YF   YRT ++YPS ++  Q N+  R  N+ +
Sbjct: 78  TLLLFYFSGLYRTTIVYPSRYV-QQVNKAMRFFNIRL 113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,026,865
Number of Sequences: 5004
Number of extensions: 63011
Number of successful extensions: 136
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)