Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6367
         (735 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29614-6|AAA68809.2|  378|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U23450-6|AAK31469.1|  790|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z81453-3|CAB03791.1|  480|Caenorhabditis elegans Hypothetical pr...    28   6.0  
AC098856-8|ABO52819.1|  384|Caenorhabditis elegans Hypothetical ...    28   6.0  
AF039042-12|AAC48249.1|  352|Caenorhabditis elegans Hypothetical...    28   7.9  

>U29614-6|AAA68809.2|  378|Caenorhabditis elegans Hypothetical
           protein F18E9.3 protein.
          Length = 378

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 22/84 (26%), Positives = 35/84 (41%)
 Frame = +1

Query: 37  NFRGEWHHSHGNTS*AMGSTTHPSNKFKKIKTLQIPTTKLFLGTGPENFSSRTF*VVVGP 216
           N R +W  +  + S  +    HP  +F + +  + P  KL      E  S       V P
Sbjct: 238 NTRAQWWKTTTSASRWVAGPRHPP-RFNQNQNWKHPIRKL-----QETISQTAAPPRVDP 291

Query: 217 IMSTGSNLL*VRAGRYHRPTYFCR 288
           + ++    + +  GRY  PTY CR
Sbjct: 292 VSNSQPKPVVIHTGRYSGPTYNCR 315


>U23450-6|AAK31469.1|  790|Caenorhabditis elegans Hypothetical
           protein C30B5.5 protein.
          Length = 790

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -1

Query: 282 EIGRAVVPTRADSQEVTTSTHNRSYHHSKC 193
           E+  + +PT +DSQ++     + S+HHSKC
Sbjct: 576 EVTESWLPTASDSQKMKKQA-SESFHHSKC 604


>Z81453-3|CAB03791.1|  480|Caenorhabditis elegans Hypothetical
           protein B0250.4 protein.
          Length = 480

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +1

Query: 268 RPTYFCREAVMRFGLKGS-RFNNAEILE 348
           RPTYFC    MRFG + +  F+  E  E
Sbjct: 266 RPTYFCDRCPMRFGTESALNFHQYETYE 293


>AC098856-8|ABO52819.1|  384|Caenorhabditis elegans Hypothetical
           protein Y37F4.6 protein.
          Length = 384

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 495 LCGVQ*KRFEVGKKHLILHISNTELWLFILLPFC 596
           LC +Q    +  ++H+  HI N  LWL   + +C
Sbjct: 219 LCNIQFAADQHYREHVATHIENPHLWLVPTILYC 252


>AF039042-12|AAC48249.1|  352|Caenorhabditis elegans Hypothetical
           protein ZK697.1 protein.
          Length = 352

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/53 (20%), Positives = 30/53 (56%)
 Frame = +3

Query: 540 LILHISNTELWLFILLPFCSISQINLVD*RISQFTSKKVVCDISIEVLYKMVN 698
           LILH + ++L + I + +CS++  ++++          +  D+++E+ + + N
Sbjct: 188 LILHFAQSQLNIAIFVVYCSMASYSVINYNFYLQKESLLKTDLTVEMWHNLFN 240


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,742,197
Number of Sequences: 27780
Number of extensions: 350776
Number of successful extensions: 668
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)