Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6367
         (735 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   3.9  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   9.1  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   9.1  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   9.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.1  

>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 123 NQNVTNTYNEVISRNRTRKFFFKNIL 200
           N N  N YN     N  +K ++KN +
Sbjct: 326 NYNNYNNYNNNNYNNYNKKLYYKNYI 351


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 445 LSNKKSLDSFNLGHSYTSVEYNESVLKSEKNI 540
           LSNK   ++ N  ++Y +  YN +  K   NI
Sbjct: 85  LSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNI 116


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 445 LSNKKSLDSFNLGHSYTSVEYNESVLKSEKNI 540
           LSNK   ++ N  ++Y +  YN +  K   NI
Sbjct: 85  LSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNI 116


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 445 LSNKKSLDSFNLGHSYTSVEYNESVLKSEKNI 540
           LSNK   ++ N  ++Y +  YN +  K   NI
Sbjct: 85  LSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNI 116


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 34   ANFRGEWHH 60
            A FRG WHH
Sbjct: 978  APFRGFWHH 986


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,628
Number of Sequences: 438
Number of extensions: 4447
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)