Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6365
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    28   1.4  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    27   3.2  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   4.3  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    25   7.5  
SPBC1A4.01 |apc10|SPBC1E8.06|anaphase-promoting complex subunit ...    25   9.9  

>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 553 NFNFYLLQEVTEVALNSEIIYYMNKSKSLVGYF 651
           N  F +L EV E A     IYY N   S VG++
Sbjct: 885 NLWFSVLSEVEEDANGDATIYYKNDDYSAVGFY 917


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 562 FYLLQEVTEVALNSEIIYYMNKSKSLVGY 648
           F L +E    ALN   + Y+NK KS+V Y
Sbjct: 324 FKLERERPAHALNINTLLYVNKEKSIVSY 352


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 353 QISKTLSNTYNHSSQSNKLLLSLTNEKAYVKQSLMLNQLYAPTNK 487
           ++SK LSNT     +S  L +S    KAY + +  L++ +    K
Sbjct: 7   KVSKNLSNTSAFLVKSKPLYISFCTCKAYFEDNTSLSRRFFSAKK 51


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 386  HSSQSNKLLLSLTNEKAYVKQSLMLNQLYA 475
            H S S+KL L    EK+Y+ + + ++ ++A
Sbjct: 1360 HGSTSDKLFLLEIPEKSYLTEKVSISMIFA 1389


>SPBC1A4.01 |apc10|SPBC1E8.06|anaphase-promoting complex subunit
           Apc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 189

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 224 SILYVSLYLVTIVDRSYT 171
           SI YVS+YL   +D SYT
Sbjct: 74  SIKYVSMYLQYTLDESYT 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,324,960
Number of Sequences: 5004
Number of extensions: 42393
Number of successful extensions: 95
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)