Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6365
         (669 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77659-5|CAB01168.1|  953|Caenorhabditis elegans Hypothetical pr...    28   6.9  
Z36237-2|CAE17761.1|  178|Caenorhabditis elegans Hypothetical pr...    28   6.9  
AF016415-3|AAW88418.1|  658|Caenorhabditis elegans Hypothetical ...    28   6.9  
U40942-7|AAC47067.2|  218|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>Z77659-5|CAB01168.1|  953|Caenorhabditis elegans Hypothetical
           protein F23B12.7 protein.
          Length = 953

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 210 HVQNRSKNCPREYTYIHSYVGLQQTEKKVLKQ 305
           + Q R +  P +  ++H Y    Q EKKV K+
Sbjct: 731 YTQKRREEIPADERFLHRYTSSLQKEKKVKKE 762


>Z36237-2|CAE17761.1|  178|Caenorhabditis elegans Hypothetical
           protein C48D5.3 protein.
          Length = 178

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 9/34 (26%), Positives = 24/34 (70%)
 Frame = +3

Query: 348 SSKSPKHYLILTIIRHKAINYSCHLQMKRHMLNN 449
           ++++P +Y I+ I++ K ++++C  +  RH+ N+
Sbjct: 21  ATETPWYYPIIEILQAKLVDFTCSQEKIRHIKNS 54


>AF016415-3|AAW88418.1|  658|Caenorhabditis elegans Hypothetical
           protein C02A12.8 protein.
          Length = 658

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/42 (26%), Positives = 24/42 (57%)
 Frame = -1

Query: 315 ELKTVSKLFSPFVVNQRSYVCMYIHADSFCFDFVRVPLSSYN 190
           ++ ++S L +  + N   +VC  +  DSF F+F+ + L  ++
Sbjct: 173 QVYSISALLAAILTNTIGFVCFALVLDSFAFNFMLLRLWQFS 214


>U40942-7|AAC47067.2|  218|Caenorhabditis elegans Hypothetical
           protein K02E10.1 protein.
          Length = 218

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = +2

Query: 362 KTLSNTYNHSSQSNKLLLSLTNEKAYVK-QSLMLNQL--YAPTNKVTFSV 502
           +T+ N+Y HS+     +  +TNEK++   +   L ++  +AP N V   V
Sbjct: 69  RTIYNSYYHSAHGVMCVYDMTNEKSFENLEKYWLKEIKQHAPPNAVLMLV 118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,544,209
Number of Sequences: 27780
Number of extensions: 227970
Number of successful extensions: 503
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)