Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6362
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces...    27   2.6  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    27   2.6  
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   4.6  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    25   8.1  

>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 224

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 474 TTTNRNEAVEQMSQVRNRNAVHRE 403
           TTTN+NE++   S  RNR  + +E
Sbjct: 140 TTTNKNESLPGTSLKRNREIIEKE 163


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 399 SRIHTPFDEVSAHHFSRSLLEGLIFLTNRIIERP 298
           S  + PFD +S+   S+  LEGL    N+    P
Sbjct: 390 SNFYQPFDSISSMVLSKQALEGLELFVNQTDHTP 423


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 289 SHLRPLDYSIGEKNKPFKQTSGKVVGAYFVEWGVYPRKFP 408
           S L PLD+S  EK         K      +E G+YP++ P
Sbjct: 341 SSLSPLDHSSAEKEMQKAPAKNKRRRTGSLETGLYPKESP 380


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = +1

Query: 205  YQMQVELCNSDGCSSSEGVEIVVADTDGSHLRPLDYSIGEKNKPFKQT 348
            Y  +  +C ++   +S  ++ VVA  D   ++ +DY +      FK+T
Sbjct: 862  YTKRKIICATNIAETSITIDDVVAVIDSGRVKQIDYDVERDLVTFKET 909


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,912,832
Number of Sequences: 5004
Number of extensions: 60413
Number of successful extensions: 171
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)