Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6362
(711 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0367 - 28331479-28332358,28332432-28332988,28333454-283336... 30 2.1
04_04_1694 - 35419278-35419565,35419744-35419861,35420404-354204... 29 2.8
11_06_0542 + 24777453-24777632,24777654-24778478,24778576-247793... 29 3.6
10_01_0275 - 2904601-2904900,2905083-2905233,2905522-2905598,290... 29 3.6
02_03_0099 + 15206282-15206917 29 4.8
02_01_0679 - 5048653-5051394 29 4.8
10_08_0827 + 20849312-20849833,20850352-20850417,20850786-208510... 28 6.4
08_01_1036 + 10520727-10521117,10521301-10521479,10521603-105225... 28 8.4
07_03_0553 - 19390886-19391452,19391596-19391709,19391827-19391883 28 8.4
>02_05_0367 -
28331479-28332358,28332432-28332988,28333454-28333671,
28333748-28333831,28334199-28334373,28334572-28334574
Length = 638
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 369 LLRRMGCVS*KVPCGPRSGSEPDSFALRLH 458
L+R +GC + VPC P SG+E F + L+
Sbjct: 173 LIRPVGCGTEHVPCEPHSGAELGIFYIALY 202
>04_04_1694 -
35419278-35419565,35419744-35419861,35420404-35420490,
35420909-35420931,35421647-35421843,35421964-35422159,
35422382-35422481,35423288-35423374,35424053-35424282,
35424678-35424763,35425148-35425271,35425415-35428573,
35430014-35430019
Length = 1566
Score = 29.5 bits (63), Expect = 2.8
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Frame = +1
Query: 136 KKEVWSGAGSATSAAFKVKKGGRYQMQVELCNSDGCSSSE----GVEIVVADTDGSHLRP 303
++E+WSGA SA K KK + ++ DG S VEIV+ + L
Sbjct: 619 QRELWSGATLINSAVKKTKKKSKRISDIDSTGLDGLHSESFMQPAVEIVL--NQETELAS 676
Query: 304 LDYSIGEKN 330
++ S E N
Sbjct: 677 VELSFAENN 685
>11_06_0542 + 24777453-24777632,24777654-24778478,24778576-24779319,
24779422-24780354,24780456-24780938,24780969-24781082,
24781240-24781636,24781732-24782024,24782392-24782802
Length = 1459
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 428 GTGTRSTGNFLGYTPHSTK*APTTFPEVCLKG 333
G GT S G+ YT H K P +CL+G
Sbjct: 1004 GEGTPSNGDLPEYTSHCLKYRPKLLENLCLQG 1035
>10_01_0275 -
2904601-2904900,2905083-2905233,2905522-2905598,
2907201-2907390,2908796-2908981,2910521-2910571,
2911476-2911885,2912252-2912509,2912768-2913070
Length = 641
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 601 KRDYRPGTSPTKVTSGQLMHLETSEYWLKGLTFNWWL 711
K + G +PT T L+HL L+ LT NW+L
Sbjct: 128 KENGSDGVNPTSFTDAGLLHLIEGCKGLEKLTLNWFL 164
>02_03_0099 + 15206282-15206917
Length = 211
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Frame = +1
Query: 118 SRVLLDKKEVWSGAGSATSAAFKV---KKGGRYQMQVELCNSDGCSSSEGVEIVVADTD 285
+R++++ + + A +ATS A + GGRY + + ++ S++E E+VV + D
Sbjct: 38 ARLIVEAPDSAAPAAAATSLALAAAARRTGGRYALVLPDRDAAAASAAETAEVVVGEAD 96
>02_01_0679 - 5048653-5051394
Length = 913
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -1
Query: 414 VHRELSRIHTPFDEVSAHHFSRSLLEGLIFLTNRIIERPQMATISVSY 271
+ REL IH +V +S +LEG I ++ R + T SY
Sbjct: 43 IERELDMIHHFLSQVGTKIYSNKVLEGWIVRVRKVAYRVEDITDEYSY 90
>10_08_0827 +
20849312-20849833,20850352-20850417,20850786-20851082,
20851215-20851412,20851748-20851849,20851960-20852100,
20852171-20852278,20852588-20852670,20852829-20852991,
20853636-20853650,20853968-20854093
Length = 606
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 394 PRKFPVDRVPVPNLTHLLYGFIPICGG 474
P +F ++ PVPN T+ Y FIP GG
Sbjct: 488 PERFDLEG-PVPNETNTEYRFIPFSGG 513
>08_01_1036 +
10520727-10521117,10521301-10521479,10521603-10522593,
10522613-10522656
Length = 534
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +2
Query: 98 PATRPTSPESCSIRRKSGAVPAAPHRPLSK 187
P T+PT+P S + S P P +P+ +
Sbjct: 167 PTTQPTTPTSTPLPAPSAMAPGQPQQPIQQ 196
>07_03_0553 - 19390886-19391452,19391596-19391709,19391827-19391883
Length = 245
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/62 (24%), Positives = 24/62 (38%)
Frame = -1
Query: 606 PFEVSAGAAQGSWIETLKSSRPLHERCKCLKTALNFFQTVIXAITTTNRNEAVEQMSQVR 427
P G G W++ RP HER +T + T I +T +R + +
Sbjct: 154 PLPAGGGGGGGDWVDAWTVLRPEHERASARRTTAS--GTRISPCSTASRRMLASSLKKRS 211
Query: 426 NR 421
+R
Sbjct: 212 DR 213
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,491,019
Number of Sequences: 37544
Number of extensions: 451763
Number of successful extensions: 1325
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1325
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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