Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6362
(711 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024756-4|AAX88819.1| 639|Caenorhabditis elegans Hypothetical ... 33 0.20
U61958-2|AAB03182.3| 1067|Caenorhabditis elegans Hypothetical pr... 33 0.27
AC025724-10|AAG23372.2| 1073|Caenorhabditis elegans Hypothetical... 30 1.4
Z93778-7|CAB07847.1| 800|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z81532-9|CAB04328.1| 800|Caenorhabditis elegans Hypothetical pr... 29 3.3
U73476-1|AAB41492.1| 800|Caenorhabditis elegans cyclic nucleoti... 29 3.3
AL110490-16|CAB54451.2| 922|Caenorhabditis elegans Hypothetical... 29 4.3
AF040642-10|AAB94949.2| 576|Caenorhabditis elegans Hypothetical... 29 4.3
AC006617-3|AAF39764.1| 322|Caenorhabditis elegans Hypothetical ... 28 5.7
U23168-4|AAU87833.1| 1379|Caenorhabditis elegans Temporarily ass... 28 7.6
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass... 28 7.6
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass... 28 7.6
>AC024756-4|AAX88819.1| 639|Caenorhabditis elegans Hypothetical
protein Y34D9A.3 protein.
Length = 639
Score = 33.1 bits (72), Expect = 0.20
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = -1
Query: 702 IEGKTFKPVFACFKVHQLPRSYLCRARSRTIIPFEVSAGAAQGSWIETLKSSRPLHERCK 523
++ +T K +A K++ +LCR R + F S G Q +IE K LHE
Sbjct: 122 LDSETSKKAYAILKLY-----FLCRNRKSKLECF--SCGCVQKYFIELYKDGTRLHEALN 174
Query: 522 CL-KTALNFFQTVI 484
CL K+ L+ T+I
Sbjct: 175 CLIKSKLSDSPTII 188
>U61958-2|AAB03182.3| 1067|Caenorhabditis elegans Hypothetical
protein C25A8.4 protein.
Length = 1067
Score = 32.7 bits (71), Expect = 0.27
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Frame = +1
Query: 424 VPNLTHLLYGFIPICGGDGXND-SLKEIEGSFQA--LTTFMQRP*RLQGFYPRS--LGGP 588
+ THL+YG IPI G S+ ++E + + TFM RL+ ++P + L G
Sbjct: 48 ITTCTHLVYGSIPIDRDTGYPQYSVSDVESGYDIDNIRTFM----RLRKYHPNAKLLMGV 103
Query: 589 CRNLKRDYRPGTSPTKVTSGQLMHLETSEYWLKGLTFN 702
R + + + KV +G H+++ + +TFN
Sbjct: 104 VRT--KPFEDAATSVKVANGLRSHVKSKRFDGLFVTFN 139
>AC025724-10|AAG23372.2| 1073|Caenorhabditis elegans Hypothetical
protein Y67D8C.9 protein.
Length = 1073
Score = 30.3 bits (65), Expect = 1.4
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Frame = -2
Query: 308 SRGLKWLPSVSATTISTPSLELHPSELQSSTCIWYLPPFFTLKAADVALPAPLQ-TSFLS 132
S K L + +ST + ++ S LQS + Y P F A++A + + T+ S
Sbjct: 944 SHDQKLLRRTARAIVSTKNAVVYASALQSDFSLHYNPTFRKYLWAEIAKMSTFEKTALFS 1003
Query: 131 SRTLDLSAASPV--HTFQ-LTETSAASFLVTSW 42
+ + D+ AS + H+ + + E L+T+W
Sbjct: 1004 TNSTDILPASRILLHSVKTIDELQQIRGLLTNW 1036
>Z93778-7|CAB07847.1| 800|Caenorhabditis elegans Hypothetical
protein F36F2.5 protein.
Length = 800
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/62 (24%), Positives = 28/62 (45%)
Frame = -1
Query: 564 ETLKSSRPLHERCKCLKTALNFFQTVIXAITTTNRNEAVEQMSQVRNRNAVHRELSRIHT 385
E +K+ L +RCK + T+I +T N N+ V+++ +V I+
Sbjct: 671 EKIKAQAELEDRCKINPRQVPKLITLIANMTEMNENKGVQELKKVIEEETEKSRRQSIYY 730
Query: 384 PF 379
P+
Sbjct: 731 PW 732
>Z81532-9|CAB04328.1| 800|Caenorhabditis elegans Hypothetical
protein F36F2.5 protein.
Length = 800
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/62 (24%), Positives = 28/62 (45%)
Frame = -1
Query: 564 ETLKSSRPLHERCKCLKTALNFFQTVIXAITTTNRNEAVEQMSQVRNRNAVHRELSRIHT 385
E +K+ L +RCK + T+I +T N N+ V+++ +V I+
Sbjct: 671 EKIKAQAELEDRCKINPRQVPKLITLIANMTEMNENKGVQELKKVIEEETEKSRRQSIYY 730
Query: 384 PF 379
P+
Sbjct: 731 PW 732
>U73476-1|AAB41492.1| 800|Caenorhabditis elegans cyclic
nucleotide-gated channel protein.
Length = 800
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/62 (24%), Positives = 28/62 (45%)
Frame = -1
Query: 564 ETLKSSRPLHERCKCLKTALNFFQTVIXAITTTNRNEAVEQMSQVRNRNAVHRELSRIHT 385
E +K+ L +RCK + T+I +T N N+ V+++ +V I+
Sbjct: 671 EKIKAQAELEDRCKINPRQVPKLITLIANMTEMNENKGVQELKKVIEEETEKSRRQSIYY 730
Query: 384 PF 379
P+
Sbjct: 731 PW 732
>AL110490-16|CAB54451.2| 922|Caenorhabditis elegans Hypothetical
protein Y48B6A.11 protein.
Length = 922
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/78 (25%), Positives = 29/78 (37%)
Frame = +1
Query: 85 WNVWTGDAADKSRVLLDKKEVWSGAGSATSAAFKVKKGGRYQMQVELCNSDGCSSSEGVE 264
W W G + + KKEV + + A K+ K R +SDG S S G E
Sbjct: 413 WTYWYGGGRELW-IPKKKKEVPKKRRQSLADASKIAKRARLGASSTATDSDGSSGSSGSE 471
Query: 265 IVVADTDGSHLRPLDYSI 318
+ P Y++
Sbjct: 472 EATEGSSFMRALPAGYTV 489
>AF040642-10|AAB94949.2| 576|Caenorhabditis elegans Hypothetical
protein C50D2.1 protein.
Length = 576
Score = 28.7 bits (61), Expect = 4.3
Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 1/127 (0%)
Frame = +1
Query: 79 VNWNVWTGDAADKSRVLLDKKEVWSGAGSATSAAFKVKKGGRYQMQVELCNSDGCSSSEG 258
V++ W G +D L ++ WS + ++ + G + + + G +G
Sbjct: 408 VDFGTWGGGYSDN----LGVRDFWSQTQEYGANWYEGQYGYKTGWSIPIVQGIGVEGGQG 463
Query: 259 VEIVVADTDGSHLRPLDYSIGEKNKPFKQTSGKVVGAYFVEWGV-YPRKFPVDRVPVPNL 435
++ V +G RP+ + G PF + + VG ++ GV + + F V V V
Sbjct: 464 TQVSVPIKEGELGRPISVTNGYHVGPFMGLADR-VGVDWLNGGVSWNKGFAVPFVGVGVN 522
Query: 436 THLLYGF 456
T GF
Sbjct: 523 TGTAVGF 529
>AC006617-3|AAF39764.1| 322|Caenorhabditis elegans Hypothetical
protein C39B5.8 protein.
Length = 322
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = -1
Query: 525 KCLKTALNFFQTVIXAITTTNRNEAVEQMSQV-RNRNAVH-RELSRIHTPFDEV 370
K LK A+N + + T N+NE ++ + V N +VH ++++ ++ F+E+
Sbjct: 121 KDLKIAMNHASSFVLQNFTRNKNEVLKSLVNVLENGGSVHVKKINLLYLTFNEI 174
>U23168-4|AAU87833.1| 1379|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform d protein.
Length = 1379
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -1
Query: 465 NRNEAVEQMSQVRNRNAVHRELSR-IHTPFDEVSAHHFSRS 346
NR+E E S+ + N++H E S H+ ++ S H+ S
Sbjct: 1301 NRSELREMRSEEKRSNSMHHEESHYAHSSYEHTSEHYSQSS 1341
>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform b protein.
Length = 4034
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -1
Query: 465 NRNEAVEQMSQVRNRNAVHRELSR-IHTPFDEVSAHHFSRS 346
NR+E E S+ + N++H E S H+ ++ S H+ S
Sbjct: 1301 NRSELREMRSEEKRSNSMHHEESHYAHSSYEHTSEHYSQSS 1341
>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform c protein.
Length = 7548
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -1
Query: 465 NRNEAVEQMSQVRNRNAVHRELSR-IHTPFDEVSAHHFSRS 346
NR+E E S+ + N++H E S H+ ++ S H+ S
Sbjct: 1301 NRSELREMRSEEKRSNSMHHEESHYAHSSYEHTSEHYSQSS 1341
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,364,668
Number of Sequences: 27780
Number of extensions: 348388
Number of successful extensions: 997
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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