Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6360
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    27   2.5  
SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   4.4  

>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 171 VCVFLTSIQFKNVITLKKEKKKTSLPNFSSPKNIATREALHARE 302
           V V L  +Q  N++   +   +T+  NF  PK I ++E L  RE
Sbjct: 191 VPVNLNFLQSDNLVV--QSSPQTNFENFEFPKKIPSKEDLETRE 232


>SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 346

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -3

Query: 543 CISINSLHYKDYKRTALA--NDPASIEMRFANLYAVTK 436
           C+S +S   K   +  L   NDP  IEMR  +++AV K
Sbjct: 257 CLSYSSDFKKRLLKNELIAHNDPMEIEMRGCSIWAVEK 294


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,939,713
Number of Sequences: 5004
Number of extensions: 35741
Number of successful extensions: 93
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)