Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6359
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC212.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    30   0.36 
SPBCPT2R1.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    30   0.36 
SPBC409.09c |mis13|cnl1|kinetochore protein Mis13|Schizosaccharo...    27   2.5  
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   4.4  
SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce...    25   7.7  

>SPAC212.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 136

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +2

Query: 131 DLELSVNASNLEKFQLKIAQHELYEDGEILVEAILKDMAT 250
           D  L  N++N    +L I  HELY DGEI    +L+ + T
Sbjct: 11  DNPLISNSTNNVTHELLIDLHELYNDGEISRIVLLRTLVT 50


>SPBCPT2R1.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 119

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +2

Query: 131 DLELSVNASNLEKFQLKIAQHELYEDGEILVEAILKDMAT 250
           D  L  N++N    +L I  HELY DGEI    +L+ + T
Sbjct: 11  DNPLISNSTNNVTHELLIDLHELYNDGEISRIVLLRTLVT 50


>SPBC409.09c |mis13|cnl1|kinetochore protein
           Mis13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 329

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -3

Query: 678 SATSEDGKKAAKLPSNMSGLPHIACPVSQ*YEHL 577
           S+  + GK+A+ + +    LPH   P  + Y H+
Sbjct: 67  SSLDQRGKRASSIGTGFEALPHADVPSHEYYRHI 100


>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 418

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +2

Query: 44  SAFDNAVVIPPHRDLNVLRPENPTIGEMEDLELS 145
           +++ N+ V PP  D N+L PE   +      ++S
Sbjct: 159 ASYTNSPVTPPINDKNILLPEQSPLSNFSTTKIS 192


>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/47 (23%), Positives = 24/47 (51%)
 Frame = -2

Query: 466 HCPPEAEYPVEMKSCYFSIVPFVIREIEVVRQRLDITGESHWFKECL 326
           HC P +  P+         + ++ +EIE++++  ++  E+ W  E L
Sbjct: 245 HCNPNSMTPLISMITIEERIQYLQKEIELIQELHEMEPENRWCCESL 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,698,812
Number of Sequences: 5004
Number of extensions: 52599
Number of successful extensions: 141
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)