Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6359
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0590 + 34932012-34932641                                         30   1.5  
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120...    29   4.5  
03_02_0099 - 5614007-5614233,5614725-5614998,5615086-5616179,561...    29   4.5  
08_02_0760 + 20866456-20866609,20866685-20866839                       28   6.0  

>03_06_0590 + 34932012-34932641
          Length = 209

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -2

Query: 508 IDLGGHVEYAAHDRHCPPEAEYPVEMKSCYFSIVPFVIREIEVVR 374
           +DL G V+YA H   C  EA  P++++      V F     +++R
Sbjct: 159 VDLSGEVKYALHSAWCRVEARCPLKLQLAAAGSVAFQETTCDMLR 203


>04_04_1571 +
           34504087-34504421,34505002-34505731,34506091-34512077,
           34512493-34513964,34514114-34514377,34514761-34514978,
           34515759-34516030,34516190-34516559,34516578-34516797,
           34516819-34518931,34518941-34519193,34519269-34519401,
           34520597-34521114,34521207-34522115,34522195-34522368,
           34522833-34522882,34523963-34524035,34524413-34524477,
           34524736-34525522,34525622-34525878,34525989-34526109,
           34526315-34526956
          Length = 5320

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/32 (56%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +2

Query: 197 LYEDG-EILVEAILKDMATLPVLHAEQKEGGT 289
           LYE+   ILVE I K + T PV H+E K GGT
Sbjct: 447 LYEEPWSILVEQICKFIYTSPVFHSEIK-GGT 477


>03_02_0099 -
           5614007-5614233,5614725-5614998,5615086-5616179,
           5616674-5616772,5617371-5617389
          Length = 570

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -3

Query: 645 KLPSNMSGLPHIACPVSQ*YEHLPWKQKLFAGDTKNVLSMSPS 517
           KL +N +    I+C +      +PWK   F+GD++ ++  S S
Sbjct: 273 KLKANGASCLAISCELLDAIAKIPWKAPCFSGDSEWIVGASAS 315


>08_02_0760 + 20866456-20866609,20866685-20866839
          Length = 102

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/27 (55%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = -3

Query: 171 NFSRLDALTLSSKSSISPIVGF-SGLK 94
           NFS LD L LS+ S++S  VG+ SG+K
Sbjct: 28  NFSALDYLRLSTISAVSVTVGYLSGIK 54


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,844,793
Number of Sequences: 37544
Number of extensions: 378787
Number of successful extensions: 963
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)