Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6356
         (382 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    25   3.0  
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    25   4.0  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    25   5.3  
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch...    25   5.3  
SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb...    24   7.0  
SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces pomb...    24   9.3  
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    24   9.3  
SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|c...    24   9.3  
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma...    24   9.3  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    24   9.3  

>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -1

Query: 196 LNTIHI*YKLGHARFVHVICVHDPS*HFSPGSQVPLKPPQFSPNVLAHT 50
           LN   + ++  +A  +H +   DP+  FS G Q P +  +  P++L HT
Sbjct: 49  LNYTRLKHEPTNADMIH-LDREDPNSVFSIGFQTPAENDEGIPHILEHT 96


>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 25.0 bits (52), Expect = 4.0
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = -3

Query: 221 FWGYVLISTQHYTHIIQVRSRSFCSRDLR---TRSFVAFQP 108
           +W   LI  + Y+  ++V S+  CS  +R   TRS +   P
Sbjct: 595 YWLVALIQQKLYSRAVKVYSKLICSSAVRNDTTRSLIRLIP 635


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -2

Query: 108 LVRRSH*NLHNSPLTFLRILYSICTNPKLRFQVPDI 1
           LVR  +  LHNS LTF   L S+     +    PDI
Sbjct: 356 LVRPWNCGLHNSDLTFRLSLRSLALPEIVAIDSPDI 391


>SPAC1952.17c ||SPAC890.01c|GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 619

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 18  IVVWDSCRCCKVCARTLGENCGGFSG 95
           I +WDS    ++ AR  G+N  GF+G
Sbjct: 377 IRLWDSIIADQMKARLFGKNDDGFNG 402


>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = -3

Query: 188 YTHIIQVRSRSFCSRDLRTRSFVAFQPWFAGPTETSTI 75
           Y H+  +      + D   + FV+ +PW  G    ST+
Sbjct: 242 YIHVCDLAEAHVAALDYLRQHFVSCRPWNLGSGTGSTV 279


>SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 75  SPLTFLRILYSICTNPKL 22
           SP+TF+R + S+C  P L
Sbjct: 85  SPITFVRQVLSLCQYPTL 102


>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -2

Query: 333 QNYLSAAYYSFTDGFH 286
           +++LS  YY+F DGF+
Sbjct: 222 ESFLSDYYYNFHDGFY 237


>SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 154

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 106 GSQVPLKPPQFSPNVL 59
           G + PL PP+ SPNV+
Sbjct: 49  GVKEPLNPPEPSPNVI 64


>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 387

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 174 YYMCIVLSRYQNISPECR 227
           Y++  +L+RYQ ISP  R
Sbjct: 35  YHLIYILNRYQPISPNPR 52


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = -2

Query: 330 NYLSAAYYSFTDGFHKLIIVVQC*YLDVLGWSSAF 226
           N +  A Y   D  H+L +       + L W+S F
Sbjct: 349 NVIGIAAYKLEDPVHRLFVTAFSVCCECLAWTSLF 383


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,613,128
Number of Sequences: 5004
Number of extensions: 30741
Number of successful extensions: 83
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)