Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6356
         (382 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0245 + 10890555-10890962                                         29   0.94 
05_03_0244 + 10857139-10857516                                         29   0.94 
05_04_0453 + 21380962-21382320                                         29   1.6  
12_02_0588 - 20842209-20842337,20842464-20842560,20842620-208427...    28   2.9  
02_05_0681 + 30842038-30842301,30843067-30843300,30843409-308435...    27   3.8  
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120...    27   5.0  

>05_03_0245 + 10890555-10890962
          Length = 135

 Score = 29.5 bits (63), Expect = 0.94
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 69  GENCGGFSGTCEPGLKCYEGSCTQI 143
           GE+CGG +  C+ G  C  G C  +
Sbjct: 84  GEHCGGCNKACKHGRSCCGGRCVDL 108


>05_03_0244 + 10857139-10857516
          Length = 125

 Score = 29.5 bits (63), Expect = 0.94
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 69  GENCGGFSGTCEPGLKCYEGSCTQI 143
           GE+CGG +  C+ G  C  G C  +
Sbjct: 75  GEHCGGCNKACKHGRSCCGGRCVDL 99


>05_04_0453 + 21380962-21382320
          Length = 452

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 109 PGSQVPLKPPQFSPNVLAHTLQHLHESQTTIPSP 8
           P +++PL      PN+L   L HLH + T  PSP
Sbjct: 70  PATRLPLASTDLVPNLLLRRLIHLH-AATLPPSP 102


>12_02_0588 -
           20842209-20842337,20842464-20842560,20842620-20842733,
           20843140-20843749,20844739-20845462,20845542-20845620,
           20845783-20845865,20846148-20846226,20846332-20846420,
           20846499-20846591,20847288-20847337,20847417-20847600,
           20849227-20849542,20849626-20849657
          Length = 892

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +3

Query: 24  VWDSCRCCKVCARTLGENCGGFSGTCEPGLKCY 122
           V  SCR C+VC R    N   F   C+    CY
Sbjct: 186 VCPSCRSCEVCRRPGDPNKLMFCKRCDGAYHCY 218


>02_05_0681 +
           30842038-30842301,30843067-30843300,30843409-30843578,
           30844130-30844474,30844475-30844661,30844747-30844798,
           30844843-30845108,30845302-30845400,30845577-30846292,
           30846616-30847098,30847288-30847546
          Length = 1024

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 174 YYMCIVLSRYQNISPECRKQRTSLTRRD 257
           Y +C   SRY  +S +CRK     T+ +
Sbjct: 365 YIICAAWSRYDKVSEDCRKMEELKTQAE 392


>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
            34512493-34513964,34514114-34514377,34514761-34514978,
            34515759-34516030,34516190-34516559,34516578-34516797,
            34516819-34518931,34518941-34519193,34519269-34519401,
            34520597-34521114,34521207-34522115,34522195-34522368,
            34522833-34522882,34523963-34524035,34524413-34524477,
            34524736-34525522,34525622-34525878,34525989-34526109,
            34526315-34526956
          Length = 5320

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = -1

Query: 154  FVHVICVHDPS*HFSPGSQV---PLKPPQFSPNVLAHTLQHLHESQ 26
            F+H  C+  P       +QV   PLK   FSP++L+  L+H+ + +
Sbjct: 3508 FIHHQCLQKPFLELLLTTQVIHRPLKLRSFSPHLLSGHLKHIFDER 3553


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,981,702
Number of Sequences: 37544
Number of extensions: 194415
Number of successful extensions: 506
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)