Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6356
(382 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z71181-9|CAD44140.1| 960|Caenorhabditis elegans Hypothetical pr... 41 3e-04
Z71178-15|CAD44087.1| 960|Caenorhabditis elegans Hypothetical p... 41 3e-04
U39655-2|AAY86240.1| 152|Caenorhabditis elegans Hypothetical pr... 29 1.5
Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical pr... 28 2.6
X89223-1|CAA61507.1| 582|Caenorhabditis elegans sli-1 protein. 28 2.6
U58730-5|AAK84546.1| 582|Caenorhabditis elegans Suppressor of l... 28 2.6
U58730-4|AAK84547.1| 565|Caenorhabditis elegans Suppressor of l... 28 2.6
U64609-8|AAB04605.2| 465|Caenorhabditis elegans Hypothetical pr... 27 4.5
Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z93395-4|CAB07707.1| 2295|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z93395-1|CAB07704.1| 1160|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z93375-7|CAB07568.1| 2295|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical pr... 27 6.0
L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membra... 27 6.0
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 26 7.9
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 26 7.9
>Z71181-9|CAD44140.1| 960|Caenorhabditis elegans Hypothetical
protein B0024.14b protein.
Length = 960
Score = 41.1 bits (92), Expect = 3e-04
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 30 DSCRCCKVCARTLGENCGGFSGTCEPGLKCYE 125
D C CC+VC R +GE C G C+ L C++
Sbjct: 47 DQCDCCEVCIRQIGETCDGPGLVCDSHLSCHQ 78
>Z71178-15|CAD44087.1| 960|Caenorhabditis elegans Hypothetical
protein B0024.14b protein.
Length = 960
Score = 41.1 bits (92), Expect = 3e-04
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 30 DSCRCCKVCARTLGENCGGFSGTCEPGLKCYE 125
D C CC+VC R +GE C G C+ L C++
Sbjct: 47 DQCDCCEVCIRQIGETCDGPGLVCDSHLSCHQ 78
>U39655-2|AAY86240.1| 152|Caenorhabditis elegans Hypothetical
protein C46F4.3 protein.
Length = 152
Score = 28.7 bits (61), Expect = 1.5
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +3
Query: 69 GENCGGFSGTCEPGLKCYEGSC 134
G CG G C P KC EG+C
Sbjct: 93 GHPCGQ-GGVCRPSTKCIEGTC 113
>Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical protein
ZK1067.2 protein.
Length = 2219
Score = 27.9 bits (59), Expect = 2.6
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Frame = +3
Query: 30 DSCRCCKVCARTLGENCGGFSGTCEPG--LKCYEGS 131
D +C C GE C GTCE ++C G+
Sbjct: 1874 DKLKCGHACLGICGEQCPKICGTCERNKYIECVSGT 1909
>X89223-1|CAA61507.1| 582|Caenorhabditis elegans sli-1 protein.
Length = 582
Score = 27.9 bits (59), Expect = 2.6
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -1
Query: 136 VHDPS*HFSPGSQVPLKPPQFSPNVLAHTLQHLHESQTT 20
+HD S ++PL PP P L TL L+ SQT+
Sbjct: 486 LHDASNSIPSVDELPLVPPPLPPKALG-TLDTLNSSQTS 523
>U58730-5|AAK84546.1| 582|Caenorhabditis elegans Suppressor of
lineage defect protein1, isoform a protein.
Length = 582
Score = 27.9 bits (59), Expect = 2.6
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -1
Query: 136 VHDPS*HFSPGSQVPLKPPQFSPNVLAHTLQHLHESQTT 20
+HD S ++PL PP P L TL L+ SQT+
Sbjct: 486 LHDASNSIPSVDELPLVPPPLPPKALG-TLDTLNSSQTS 523
>U58730-4|AAK84547.1| 565|Caenorhabditis elegans Suppressor of
lineage defect protein1, isoform b protein.
Length = 565
Score = 27.9 bits (59), Expect = 2.6
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -1
Query: 136 VHDPS*HFSPGSQVPLKPPQFSPNVLAHTLQHLHESQTT 20
+HD S ++PL PP P L TL L+ SQT+
Sbjct: 469 LHDASNSIPSVDELPLVPPPLPPKALG-TLDTLNSSQTS 506
>U64609-8|AAB04605.2| 465|Caenorhabditis elegans Hypothetical
protein T28H11.8 protein.
Length = 465
Score = 27.1 bits (57), Expect = 4.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 243 GWSSAFYILGICFDIYSTLYTY 178
GW + +YILG+ I ST + Y
Sbjct: 177 GWEATYYILGVGTFISSTAFAY 198
>Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical
protein ZC101.2f protein.
Length = 2389
Score = 26.6 bits (56), Expect = 6.0
Identities = 11/23 (47%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Frame = +3
Query: 75 NCGGFSGTCEPG-LKCYEGSCTQ 140
NC S TCEP KC C Q
Sbjct: 182 NCPAISRTCEPNEFKCNNNKCVQ 204
>Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical
protein ZC101.2e protein.
Length = 3375
Score = 26.6 bits (56), Expect = 6.0
Identities = 11/23 (47%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Frame = +3
Query: 75 NCGGFSGTCEPG-LKCYEGSCTQ 140
NC S TCEP KC C Q
Sbjct: 182 NCPAISRTCEPNEFKCNNNKCVQ 204
>Z93395-4|CAB07707.1| 2295|Caenorhabditis elegans Hypothetical
protein ZC101.2c protein.
Length = 2295
Score = 26.6 bits (56), Expect = 6.0
Identities = 11/23 (47%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Frame = +3
Query: 75 NCGGFSGTCEPG-LKCYEGSCTQ 140
NC S TCEP KC C Q
Sbjct: 182 NCPAISRTCEPNEFKCNNNKCVQ 204
>Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical
protein ZC101.2a protein.
Length = 2482
Score = 26.6 bits (56), Expect = 6.0
Identities = 11/23 (47%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Frame = +3
Query: 75 NCGGFSGTCEPG-LKCYEGSCTQ 140
NC S TCEP KC C Q
Sbjct: 182 NCPAISRTCEPNEFKCNNNKCVQ 204
>Z93395-1|CAB07704.1| 1160|Caenorhabditis elegans Hypothetical
protein ZC101.2b protein.
Length = 1160
Score = 26.6 bits (56), Expect = 6.0
Identities = 11/23 (47%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Frame = +3
Query: 75 NCGGFSGTCEPG-LKCYEGSCTQ 140
NC S TCEP KC C Q
Sbjct: 182 NCPAISRTCEPNEFKCNNNKCVQ 204
>Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical
protein ZC101.2f protein.
Length = 2389
Score = 26.6 bits (56), Expect = 6.0
Identities = 11/23 (47%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Frame = +3
Query: 75 NCGGFSGTCEPG-LKCYEGSCTQ 140
NC S TCEP KC C Q
Sbjct: 182 NCPAISRTCEPNEFKCNNNKCVQ 204
>Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical
protein ZC101.2e protein.
Length = 3375
Score = 26.6 bits (56), Expect = 6.0
Identities = 11/23 (47%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Frame = +3
Query: 75 NCGGFSGTCEPG-LKCYEGSCTQ 140
NC S TCEP KC C Q
Sbjct: 182 NCPAISRTCEPNEFKCNNNKCVQ 204
>Z93375-7|CAB07568.1| 2295|Caenorhabditis elegans Hypothetical
protein ZC101.2c protein.
Length = 2295
Score = 26.6 bits (56), Expect = 6.0
Identities = 11/23 (47%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Frame = +3
Query: 75 NCGGFSGTCEPG-LKCYEGSCTQ 140
NC S TCEP KC C Q
Sbjct: 182 NCPAISRTCEPNEFKCNNNKCVQ 204
>Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical
protein ZC101.2a protein.
Length = 2482
Score = 26.6 bits (56), Expect = 6.0
Identities = 11/23 (47%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Frame = +3
Query: 75 NCGGFSGTCEPG-LKCYEGSCTQ 140
NC S TCEP KC C Q
Sbjct: 182 NCPAISRTCEPNEFKCNNNKCVQ 204
>L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membrane
proteoglycan protein.
Length = 2481
Score = 26.6 bits (56), Expect = 6.0
Identities = 11/23 (47%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Frame = +3
Query: 75 NCGGFSGTCEPG-LKCYEGSCTQ 140
NC S TCEP KC C Q
Sbjct: 182 NCPAISRTCEPNEFKCNNNKCVQ 204
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 26.2 bits (55), Expect = 7.9
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = +3
Query: 12 LGIVVWDSCRCCKVCARTLGENCGGFSGTCEPGLKCYEGSCTQI 143
L +V SC VC T G C C+PG G+C +
Sbjct: 832 LEVVPGASCNANTVC--TKGSTCESGLCRCQPGYIAVSGNCVAL 873
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 26.2 bits (55), Expect = 7.9
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = +3
Query: 12 LGIVVWDSCRCCKVCARTLGENCGGFSGTCEPGLKCYEGSCTQI 143
L +V SC VC T G C C+PG G+C +
Sbjct: 929 LEVVPGASCNANTVC--TKGSTCESGLCRCQPGYIAVSGNCVAL 970
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,973,396
Number of Sequences: 27780
Number of extensions: 184666
Number of successful extensions: 679
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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