Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6355
(686 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po... 205 5e-54
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 198 5e-52
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy... 30 0.36
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 30 0.36
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p... 28 1.1
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 27 2.5
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 27 2.5
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 27 3.4
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 27 3.4
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 26 4.4
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 26 5.9
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 25 7.8
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr... 25 7.8
SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 7.8
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc... 25 7.8
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S... 25 7.8
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3... 25 7.8
>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 205 bits (500), Expect = 5e-54
Identities = 100/176 (56%), Positives = 129/176 (73%), Gaps = 2/176 (1%)
Frame = +3
Query: 105 STRKELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWR 284
++R++ V AKLAEQAERY+ M MK V T EL+ EERNLLSVAYKNV+GARR+SWR
Sbjct: 4 TSREDAVYLAKLAEQAERYEGMVENMKSVASTDQELTVEERNLLSVAYKNVIGARRASWR 63
Query: 285 VISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFY 458
++SSIEQK E G+ + ++ KEYR K+E+EL IC D+L +L+KHLIP A++ ESKVFY
Sbjct: 64 IVSSIEQKEESKGNTAQVELIKEYRQKIEQELDTICQDILTVLEKHLIPNAASAESKVFY 123
Query: 459 LKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPHKAGSGVKF 626
KMKGDYYRYLAE A GE R + S + Y+ A EI+ A++ PTHP + G + F
Sbjct: 124 YKMKGDYYRYLAEFAVGEKRQHSADQSLEGYKAASEIATAELAPTHPIRLGLALNF 179
Score = 63.3 bits (147), Expect = 3e-11
Identities = 29/38 (76%), Positives = 32/38 (84%)
Frame = +1
Query: 571 ARRKCSPHTPIRLGLALNFSVFYYEILNSPDKACQLAK 684
A + +P PIRLGLALNFSVFYYEILNSPD+AC LAK
Sbjct: 161 ATAELAPTHPIRLGLALNFSVFYYEILNSPDRACYLAK 198
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 198 bits (484), Expect = 5e-52
Identities = 98/176 (55%), Positives = 128/176 (72%), Gaps = 2/176 (1%)
Frame = +3
Query: 105 STRKELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWR 284
++R+ V AKLAEQAERY++M MK+V + +LS EERNLLSVAYKN++GARR+SWR
Sbjct: 3 NSRENSVYLAKLAEQAERYEEMVENMKKVACSNDKLSVEERNLLSVAYKNIIGARRASWR 62
Query: 285 VISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFY 458
+ISSIEQK E G+ R+ + KEYR K+E EL +IC+DVL +L+KHLIP A+ ESKVFY
Sbjct: 63 IISSIEQKEESRGNTRQAALIKEYRKKIEDELSDICHDVLSVLEKHLIPAATTGESKVFY 122
Query: 459 LKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPHKAGSGVKF 626
KMKGDYYRYLAE GE + S +AY+ A +I+ A++ PT P + G + F
Sbjct: 123 YKMKGDYYRYLAEFTVGEVCKEAADSSLEAYKAASDIAVAELPPTDPMRLGLALNF 178
Score = 57.2 bits (132), Expect = 2e-09
Identities = 25/32 (78%), Positives = 28/32 (87%)
Frame = +1
Query: 589 PHTPIRLGLALNFSVFYYEILNSPDKACQLAK 684
P P+RLGLALNFSVFYYEIL+SP+ AC LAK
Sbjct: 166 PTDPMRLGLALNFSVFYYEILDSPESACHLAK 197
>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 29.9 bits (64), Expect = 0.36
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Frame = +3
Query: 126 QRAKLAEQAERYDDMAAAMKEVT--ETGVELSNEERN-LLSVAYKNVVGARRSSWRVIS 293
++ K ++ E + ++ + +K V+ ET E+SN+E N LL + YK V S+W S
Sbjct: 11 EQGKFNDKEEGFSNLKS-LKHVSHSETDFEVSNDEDNQLLELGYKPVFKREFSTWATFS 68
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 29.9 bits (64), Expect = 0.36
Identities = 19/90 (21%), Positives = 37/90 (41%)
Frame = +3
Query: 117 ELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRVISS 296
E + R + + Y+ MA + E E ++ + LLS Y N +R+ +
Sbjct: 3011 EELMRERFEHLLKAYEKMALMVAEQEEFNAKIEDMALKLLSEKYDNEAYQAELFYRLSNC 3070
Query: 297 IEQKTEGSERKQQMAKEYRVKVEKELREIC 386
+E+ + EY +E+ L++ C
Sbjct: 3071 VEKVLHNKISITDLKTEYEEILEQTLKKEC 3100
>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 28.3 bits (60), Expect = 1.1
Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 4/100 (4%)
Frame = +3
Query: 300 EQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKM-KGD 476
E E+ Q++A+ Y+V + +LRE YD LG + +P A ++ F+ + GD
Sbjct: 43 ENPEAAREKFQKLAEAYQVLSDPKLRE-KYDKLGKVG--AVPDAGFEDAFEFFKNLFGGD 99
Query: 477 YYR-YLAEVATGETRHSVV--EDSQKAYQDAFEISKAKMQ 587
+R Y+ E+ + ++ E KA +D E SK ++Q
Sbjct: 100 SFRDYVGELNLLKELCKMINEEPELKAIEDT-EESKKQLQ 138
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 27.1 bits (57), Expect = 2.5
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Frame = +3
Query: 111 RKELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRVI 290
++E QR + Q R D M + +G S+ + SV+ + +R S+
Sbjct: 321 KQEKEQRLFMLAQKAREDRMG---RNAASSGP--SHAKPRSTSVSSEERSRSRAGSFSHH 375
Query: 291 SSIEQKTEGSE---RKQQMAKEYRVKVEKELR 377
S E + E SE R+Q++ +E R + EK+LR
Sbjct: 376 SESENEDEDSEAFRRRQELRRERRRQAEKDLR 407
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1778
Score = 27.1 bits (57), Expect = 2.5
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +3
Query: 402 LLDKHLIPKASNPESKVFYLKMKGDYYR---YLAEVATGETRHSVVEDS 539
+++K IP++ E+K Y + GD+ +L E A E H V+ D+
Sbjct: 1608 MIEKLCIPESWLNEAKALYARYVGDHLNELYFLQEAALYEDAHKVLLDT 1656
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 249 KNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVE 365
KN+ S+ R +SS + K +E + M +Y K+E
Sbjct: 350 KNLENDEESTLRALSSFQSKIRNAEDEDVMDSQYGSKIE 388
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +3
Query: 45 FSPSDK-GISELVLFHRPRCPSTRKELVQRAKLAEQAERYDDMAAAMKEVTE 197
FSP +K + +L LFH + PS+++ + + + DD A V+E
Sbjct: 162 FSPPEKPSMKDLALFHGNKSPSSKETIPKVSNSNSSDTSTDDQAYLNVSVSE 213
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 303 QKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPK 428
+K + + KEY K +++LR+ D+ LL KH I +
Sbjct: 328 EKQRSKDEYASLYKEYTRKEQEKLRKQNDDLQNLLSKHRISR 369
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +3
Query: 237 SVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKE 371
S +Y + G S W+ I ++ K+ G +R ++ Y +KE
Sbjct: 61 SFSYPFLKGKSDSPWQAIQLLDFKSSGQQRAAYYSERYHSFRDKE 105
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1207
Score = 25.4 bits (53), Expect = 7.8
Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 3/125 (2%)
Frame = +3
Query: 231 LLSVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYR-VKVEKELR-EICYDVLGL 404
L+S +N A RS + + I + S + ++ + YR VK K L +IC+ +
Sbjct: 968 LVSYVRRNAETAERS--QALPFITRNL-ASIKSHELHEAYRLVKANKILEAQICFRSIIY 1024
Query: 405 LDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATG-ETRHSVVEDSQKAYQDAFEISKAK 581
L L A++ E + + RY+ ++ E R ED+++A + ++ + A
Sbjct: 1025 LA--LTTVANSEEEADEISALIDECCRYIVALSCELERRRLGEEDTKRALELSYYFASAD 1082
Query: 582 MQPTH 596
+QP H
Sbjct: 1083 LQPMH 1087
>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 697
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -1
Query: 668 ALSGEFNIS**KTEKFNARPSLMGVCGLHFRLADFKSIL 552
AL F +S F+ R ++ +C ++RL DFKS++
Sbjct: 571 ALLYSFKVSDVDDSHFSFRSQIL-ICWCYYRLNDFKSLI 608
>SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 85
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 593 CGLHFRLADFKSILVCFL*ILYNRMSGFSCGHFC 492
C L+F L + K+ L+ I+Y + GFS H C
Sbjct: 46 CLLNFSLRENKNYLI----IVYLPIEGFSANHMC 75
>SPBC6B1.04 |mde4||monopolin-like complex subunit
Mde4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 25.4 bits (53), Expect = 7.8
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +3
Query: 321 ERKQQMAKEYRVKVEKELREICYDV--LGLLDKHLIPKASNPE 443
E++Q A +YR+KVE+ +I V + L+ L + SNPE
Sbjct: 85 EQEQNEANDYRLKVERLEHKISDYVQEINSLNSQLQIQKSNPE 127
>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 25.4 bits (53), Expect = 7.8
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = +3
Query: 405 LDKHLIPKA--SNPESKVFYLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKA 578
+++H + K+ S P S+ YLK+ YR+LA ++++ ++ + IS +
Sbjct: 5 IERHHVKKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPISIS 64
Query: 579 KMQPTHPHKAGS 614
K+ K+ S
Sbjct: 65 KIAALTSRKSAS 76
>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 378
Score = 25.4 bits (53), Expect = 7.8
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +3
Query: 456 YLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQD-AFEISKAKMQPTHPHKAGSGV 620
+++ K + Y YL +VA HS ++ K+ Q+ A E K + P + +GV
Sbjct: 252 HIEKKPEVYEYLDKVAAWIYEHSKPSETVKSEQETAVEHPKPTATTSAPSASPTGV 307
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,853,994
Number of Sequences: 5004
Number of extensions: 56765
Number of successful extensions: 190
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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