Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6354
         (321 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...    87   6e-19
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    28   0.30 
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha...    27   0.53 
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    27   0.93 
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    25   2.1  
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    24   5.0  
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy...    24   5.0  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    24   5.0  
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    24   5.0  
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    24   6.6  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    24   6.6  
SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr...    23   8.7  
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    23   8.7  
SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr 2...    23   8.7  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score = 87.0 bits (206), Expect = 6e-19
 Identities = 38/80 (47%), Positives = 59/80 (73%)
 Frame = +2

Query: 80  KSNYFVKIIQLLDEYPKCFILGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHL 259
           K+ YF K+  L ++Y   F++  DNV SQQM  +R  LRG++ ++MGKNTM+R+A++  +
Sbjct: 8   KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGII 67

Query: 260 DNNPALEKLLPHMKGNVGFV 319
           ++ P LE+LLP ++GNVGFV
Sbjct: 68  NDMPELERLLPVVRGNVGFV 87


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 28.3 bits (60), Expect = 0.30
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 210 CSWEKTQ*CAKPSKTTWTTIQPSRNCCHT*RATLAS 317
           CS EKT  C++  K+  T+ +PS  CC   ++T+ +
Sbjct: 264 CSTEKTSCCSQEKKSCCTSEKPS--CCSNGKSTVCA 297


>SPAC823.13c |||mitochondrial inner membrane
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 27.5 bits (58), Expect = 0.53
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 276 RAGLLSRWSLMALRIIVFFPMSTILEPR 193
           +A     W LM + +++F  +  ILEPR
Sbjct: 162 QASTWGTWGLMGINVVLFVVVQLILEPR 189


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 26.6 bits (56), Expect = 0.93
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -2

Query: 305 CPSCVATVSRGLDCCPGGL--*WLCASLCFFP*ARYWSHVA 189
           CPS V +++  ++C  GG+   W   + C  P A   S +A
Sbjct: 63  CPSLVGSMAFSMNCGAGGMVWSWFVGATCLLPIAFALSELA 103


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -3

Query: 316 EANVALHVWQQFLEGWIVVQVVFDGF 239
           E  VA+H +QQ  EG+ VV VVF+ +
Sbjct: 245 EKQVAIH-FQQSKEGYEVVHVVFNDY 269


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 129 FGYSSKSWMILTK*LDFQVALSSLP 55
           F Y++K+W ++ K L  QV    +P
Sbjct: 317 FAYATKTWHLIEKNLPTQVGFLPIP 341


>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 311 QRCPSCVATVSRGLDCC 261
           QRCP+C   V R   CC
Sbjct: 366 QRCPTCDRVVERIDGCC 382


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 121  LVQELDDLNEVVRLPSSLVLPTHPG 47
            L QE+  L   +RLP+ L  P++ G
Sbjct: 931  LTQEITQLGSNMRLPTKLTRPSNDG 955


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 312 PTLPFMCGNSFSRAGLLSRWSLMALRII 229
           PTLP +   + S +G+LSR + + ++ I
Sbjct: 49  PTLPRLAARNISNSGILSRTTPVIIKQI 76


>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 236 RKAIKDHLDNNPALEKLLPHMKGNVG 313
           RK   +H D    LEK++    GN G
Sbjct: 143 RKKDNEHRDEMEGLEKVMKQRAGNTG 168


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -3

Query: 310 NVALHVWQQFLEGWIVVQVVF 248
           N  +  W +F +GW +  V F
Sbjct: 431 NTYIGRWHKFFQGWFITLVTF 451


>SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 226

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
 Frame = +1

Query: 175 ADPYLATWLQYRAHGKKHNDAQSHQ-----RPPGQQSS 273
           A PY   +L+  A  KK ND + HQ      PP  +SS
Sbjct: 65  ATPYEENFLRAIAPVKKLNDTELHQTLYIEHPPNLESS 102


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 9   LSLNFIEVPTPHYP 50
           L LN  E+PT HYP
Sbjct: 243 LKLNESEIPTYHYP 256


>SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 202

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 7/16 (43%), Positives = 14/16 (87%)
 Frame = +2

Query: 215 MGKNTMMRKAIKDHLD 262
           +GK+T++++ +KDH D
Sbjct: 29  VGKSTLLKRLLKDHGD 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,486,728
Number of Sequences: 5004
Number of extensions: 27068
Number of successful extensions: 67
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)