Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6354
(321 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 91 2e-19
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 91 2e-19
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 91 2e-19
11_01_0033 - 251730-251855,252068-252144,252228-252318,252644-25... 38 0.002
12_01_0032 - 266954-267079,267204-267245,267290-267366,267450-26... 36 0.005
08_02_1369 - 26445725-26445812,26446443-26446529,26446720-264469... 27 2.5
05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225 27 2.5
03_02_0600 - 9748382-9748933,9749805-9749840,9751164-9751218,975... 27 2.5
10_01_0266 + 2816391-2818898,2818934-2819162,2819369-2819444,281... 27 3.3
03_06_0135 + 31928838-31929698,31929783-31929932,31930795-319310... 27 3.3
12_02_0723 - 22532379-22532902,22533060-22533135,22533195-225333... 27 4.3
11_06_0395 + 23088737-23088823,23090198-23090346,23090570-230907... 27 4.3
04_04_0849 - 28689098-28689188,28689373-28689503,28689850-286899... 27 4.3
03_05_0968 + 29277122-29277445,29278389-29278505,29278957-292791... 27 4.3
06_03_0546 + 21988896-21989009,21989039-21989422,21989475-21989699 26 5.7
01_06_1468 + 37574124-37574180,37574275-37574346,37574437-375745... 26 5.7
03_01_0168 + 1382531-1383931,1384028-1384150 26 7.6
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 91.1 bits (216), Expect = 2e-19
Identities = 48/89 (53%), Positives = 59/89 (66%), Gaps = 2/89 (2%)
Frame = +2
Query: 59 REDKATWKSNYFVKIIQLLDEYPKCFILGADNVGSQQMQQIRISLRGSSIVLMGKNTMMR 238
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 239 KAIKDHLDN--NPALEKLLPHMKGNVGFV 319
+ IK H DN N +L+P + GNVG +
Sbjct: 64 RCIKVHADNTGNKEFLELMPLLVGNVGLI 92
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 90.6 bits (215), Expect = 2e-19
Identities = 48/89 (53%), Positives = 59/89 (66%), Gaps = 2/89 (2%)
Frame = +2
Query: 59 REDKATWKSNYFVKIIQLLDEYPKCFILGADNVGSQQMQQIRISLRGSSIVLMGKNTMMR 238
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 239 KAIKDHLDN--NPALEKLLPHMKGNVGFV 319
+ IK H DN N +L+P + GNVG +
Sbjct: 64 RCIKVHADNTGNKDFLELMPLLVGNVGLI 92
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 90.6 bits (215), Expect = 2e-19
Identities = 48/89 (53%), Positives = 59/89 (66%), Gaps = 2/89 (2%)
Frame = +2
Query: 59 REDKATWKSNYFVKIIQLLDEYPKCFILGADNVGSQQMQQIRISLRGSSIVLMGKNTMMR 238
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 239 KAIKDHLDN--NPALEKLLPHMKGNVGFV 319
+ IK H DN N +L+P + GNVG +
Sbjct: 64 RCIKVHADNTGNKDFLELMPLLVGNVGLI 92
>11_01_0033 -
251730-251855,252068-252144,252228-252318,252644-252704,
252800-252858,252955-253045,253238-253406,253760-253787
Length = 233
Score = 37.5 bits (83), Expect = 0.002
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
Frame = +2
Query: 17 KFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFILGADNVGSQQMQQIRISLR 196
K R+ TLS+ ++ K I ++ Y ++ DN+ +Q+++ +R L+
Sbjct: 3 KSKRNRPVTLSKTKKKPGLERKGKVVTDIKDAVEHYANAYVFTYDNMRNQKLKDLREQLK 62
Query: 197 GSS-IVLMGKNTMMRKAIKDHLDN-NPALEKLLPHMKGNVG 313
SS I L GK M + D L KL ++G+ G
Sbjct: 63 SSSRIFLAGKKVMQIALGRSSADEAKTGLHKLSKFLQGDTG 103
>12_01_0032 -
266954-267079,267204-267245,267290-267366,267450-267540,
267864-267924,268021-268079,268176-268266,268481-268698,
268818-268824,269013-269148,270064-270307
Length = 383
Score = 36.3 bits (80), Expect = 0.005
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 2/97 (2%)
Frame = +2
Query: 29 SPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFILGADNVGSQQMQQIRISLRGSS- 205
S TLS+ ++ K I ++ Y ++ DN+ +Q+++ +R L+ SS
Sbjct: 143 SSAVTLSKTKKKPGLERKGKVVTDIKDAVEHYANAYVFTYDNMRNQKLKDLREQLKSSSR 202
Query: 206 IVLMGKNTMMRKAIKDHLDN-NPALEKLLPHMKGNVG 313
I L GK M + D L KL ++G+ G
Sbjct: 203 IFLAGKKVMQIALGRSPADEAKTGLHKLSKFLQGDTG 239
>08_02_1369 -
26445725-26445812,26446443-26446529,26446720-26446928,
26447501-26447583,26447672-26447720,26447800-26447959,
26448795-26448891,26449424-26449535,26449637-26449702,
26450135-26450206,26450413-26450487,26451139-26451266,
26451551-26451772,26452084-26452355,26452447-26452543,
26452633-26452738,26454834-26455220
Length = 769
Score = 27.5 bits (58), Expect = 2.5
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -3
Query: 292 WQQFLEGWIVVQVVFDGFAHHCV 224
W FLEGW V F+G A H V
Sbjct: 356 WSPFLEGWNSPAVQFEGPAVHVV 378
>05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225
Length = 554
Score = 27.5 bits (58), Expect = 2.5
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 80 KSNYFVKIIQLLDEYPKCF 136
+++Y VKII+LL EY CF
Sbjct: 68 RADYKVKIIELLKEYVDCF 86
>03_02_0600 -
9748382-9748933,9749805-9749840,9751164-9751218,
9751588-9751697,9751955-9752602
Length = 466
Score = 27.5 bits (58), Expect = 2.5
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Frame = +2
Query: 131 CFILGA---DNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEKLLPHMK 301
C++L + + +Q+Q IR +L + +L+ KNT++ KAI + P E L P MK
Sbjct: 60 CYLLAGIRYEGLTVKQLQGIRDTLPETCRLLVAKNTLVGKAI----EGTP-WEALKPCMK 114
Query: 302 G 304
G
Sbjct: 115 G 115
>10_01_0266 +
2816391-2818898,2818934-2819162,2819369-2819444,
2819776-2819830,2822042-2822110,2823077-2823321,
2824029-2824065
Length = 1072
Score = 27.1 bits (57), Expect = 3.3
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 5 CLVLKFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPK 130
CL L+F T R R K T K + II++L+ YP+
Sbjct: 812 CLFLEFLMLMTCTTIRNSRSFKFTHKKFGYWMIIEMLNSYPR 853
>03_06_0135 +
31928838-31929698,31929783-31929932,31930795-31931065,
31931157-31931249,31931442-31931616,31931715-31931960,
31932100-31932294,31932604-31932802
Length = 729
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 208 RAHGKKHNDAQSHQRPPGQQSSPRETVA 291
R+H K+H A SH P +SP T A
Sbjct: 103 RSHKKRHPPAGSHPHRPNATASPDSTPA 130
>12_02_0723 -
22532379-22532902,22533060-22533135,22533195-22533380,
22533459-22534323,22534740-22534918,22535168-22535542
Length = 734
Score = 26.6 bits (56), Expect = 4.3
Identities = 17/35 (48%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +2
Query: 188 SLRGSSIVLMGKNT-MMRKAIKDHLDNNPALEKLL 289
SLR +I MG+NT ++ +A+KD+ N ALE LL
Sbjct: 700 SLRHVTIDYMGENTAVIEEALKDY-PNQAALELLL 733
>11_06_0395 + 23088737-23088823,23090198-23090346,23090570-23090708,
23090795-23090889,23090967-23091080,23091674-23091803,
23091931-23092052,23092889-23093007,23093946-23094034,
23094072-23094245,23094310-23094616,23094726-23095180,
23095334-23096315,23096381-23097396,23097757-23097792,
23098065-23098130
Length = 1359
Score = 26.6 bits (56), Expect = 4.3
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +2
Query: 122 YPKCFIL--GADNVGSQQMQQIRISLRGSSIV 211
Y KC I+ G DN+ Q MQQ R SL I+
Sbjct: 1292 YTKCLIISVGRDNIPWQWMQQNRTSLETLEIL 1323
>04_04_0849 -
28689098-28689188,28689373-28689503,28689850-28689956,
28692318-28692396,28692583-28692678,28692777-28693049,
28693139-28693285,28693381-28693723,28693784-28693995
Length = 492
Score = 26.6 bits (56), Expect = 4.3
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +2
Query: 122 YPKCF--ILGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKD 253
YP F ILG DNVG QQ R L+ + G ++ I+D
Sbjct: 115 YPDSFVEILGKDNVGEQQGAMFRY-LKNMVLRYFGPESLKEGIIRD 159
>03_05_0968 +
29277122-29277445,29278389-29278505,29278957-29279114,
29279678-29279727,29279968-29280161,29280867-29281049,
29281152-29281270,29281383-29281522,29281857-29281937,
29282286-29282389
Length = 489
Score = 26.6 bits (56), Expect = 4.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 319 HEANVALHVWQQFLEGWIVVQVVFDGFAHH 230
HEA+ ++W+ + GW + F GFA H
Sbjct: 191 HEASN--YLWELYYGGWAAPNIYFLGFAGH 218
>06_03_0546 + 21988896-21989009,21989039-21989422,21989475-21989699
Length = 240
Score = 26.2 bits (55), Expect = 5.7
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +1
Query: 208 RAHGKKHNDAQSHQRPPGQQSSPR 279
R KKHN ++ H PP +PR
Sbjct: 72 RKKKKKHNKSKHHHTPPPPSPTPR 95
>01_06_1468 +
37574124-37574180,37574275-37574346,37574437-37574513,
37574897-37574978,37576005-37576069,37576313-37576354,
37576452-37576503,37576631-37576679,37576784-37576797,
37576942-37577049,37577129-37577272,37577421-37577810
Length = 383
Score = 26.2 bits (55), Expect = 5.7
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 196 WLQYRAHGKKHNDAQSHQRPPGQQSSPRETVA 291
+LQY +H + D SH R P Q P ++
Sbjct: 74 YLQYSSHQELTTDQSSHGRNPDQAFKPSYNIS 105
>03_01_0168 + 1382531-1383931,1384028-1384150
Length = 507
Score = 25.8 bits (54), Expect = 7.6
Identities = 16/43 (37%), Positives = 16/43 (37%), Gaps = 9/43 (20%)
Frame = +3
Query: 189 RYVAPVSCSWEKTQ*CA---------KPSKTTWTTIQPSRNCC 290
R VAPV C W A KP W P RNCC
Sbjct: 433 RRVAPVKCGWRIPDPAALLDRVIVLKKPDPNLWKR-SPRRNCC 474
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,114,127
Number of Sequences: 37544
Number of extensions: 195909
Number of successful extensions: 564
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 411066120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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