Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6354
         (321 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   0.91 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   2.1  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   2.1  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   2.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   2.8  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    21   3.7  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   3.7  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   4.8  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        20   6.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        20   6.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        20   6.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   6.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   8.4  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    20   8.4  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 0.91
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +1

Query: 199 LQYRAHGKKHNDAQSHQRPPGQQSSPRETVATHEGQRWLR 318
           LQ   H  +    Q H RP  QQ   ++     + +R LR
Sbjct: 144 LQNHHHHLQSTAVQDHHRPYQQQQQQQQRQQQRQEERRLR 183


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -1

Query: 294 CGNSFSRAGLLSRWSLMALRIIVFF-PMSTIL 202
           CG  +   GLLS   L+   I V+F P+  I+
Sbjct: 202 CGTDYFNRGLLSASYLVCYGIWVYFVPLFLII 233


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -1

Query: 294 CGNSFSRAGLLSRWSLMALRIIVFF-PMSTIL 202
           CG  +   GLLS   L+   I V+F P+  I+
Sbjct: 78  CGTDYFNRGLLSASYLVCYGIWVYFVPLFLII 109


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 2.8
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +2

Query: 194 RGSSIVLMGKNTMMRKAIKDHLDNNPALEKLLPHM 298
           RG + V +G N       K +     AL  L+PHM
Sbjct: 73  RGLTAVFLGLNLGFLAWAKHNPRGKDALWSLVPHM 107


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 2.8
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +2

Query: 77  WKSNYFVKIIQLLDEYP 127
           W+   F  ++++LDE+P
Sbjct: 862 WRHWKFPNLVEVLDEFP 878


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 321 NTKPTLPFMCGNSFSRAGLL 262
           +T P    +CG +FSR  LL
Sbjct: 39  HTLPCKCHLCGKAFSRPWLL 58


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -2

Query: 245 WLCASLCFFP*ARYWSHV 192
           W+C+S   FP   +W  V
Sbjct: 171 WICSSAISFPAIVWWRAV 188


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 212 LMGKNTMMRKAIKDHLDNNPALEKLLPH 295
           L GK+  + K IK  ++N    ++ LP+
Sbjct: 110 LGGKHKFISKKIKKTMENKDITKRPLPN 137


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 44  LSRMGREDKATW 79
           L ++G E+KA W
Sbjct: 330 LGKLGEEEKADW 341


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 44  LSRMGREDKATW 79
           L ++G E+KA W
Sbjct: 330 LGKLGEEEKADW 341


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 44  LSRMGREDKATW 79
           L ++G E+KA W
Sbjct: 330 LGKLGEEEKADW 341


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +3

Query: 162 RNRCSRSVSRYVAPVSCSWEKTQ*CAKPSKTTWTT 266
           R   + SV+R   P+S SW K      PS+    T
Sbjct: 627 RTTLTCSVTRGDLPLSISWLKDGRAMGPSERVHVT 661


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -3

Query: 307 VALHVWQQFLEG 272
           V +H W +F+EG
Sbjct: 241 VPVHRWYKFIEG 252


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 7/28 (25%), Positives = 13/28 (46%)
 Frame = +1

Query: 220 KKHNDAQSHQRPPGQQSSPRETVATHEG 303
           ++ + A S Q  PG     ++    H+G
Sbjct: 207 QQQSQAASQQSQPGMHPRQQQQAQQHQG 234


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,088
Number of Sequences: 438
Number of extensions: 1995
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6968808
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)