Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6352
(558 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0339 + 23287620-23287676,23287784-23287849,23287937-232880... 170 6e-43
05_07_0067 + 27463703-27463705,27464309-27464365,27464779-274648... 144 3e-35
06_03_0477 - 21250811-21250981,21251261-21251374,21251447-212516... 95 3e-20
06_03_1193 - 28298656-28298754,28299303-28299377,28299456-282995... 93 2e-19
06_03_0353 + 19810945-19810975,19811308-19811369,19811741-198118... 90 1e-18
02_02_0253 - 8325437-8325628,8325705-8325779,8325933-8326037,832... 88 4e-18
04_04_0729 + 27612106-27612195,27612284-27612370,27612469-276125... 84 6e-17
02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949 76 2e-14
10_08_0620 - 19321612-19323237 73 2e-13
05_01_0337 - 2658647-2658722,2658797-2658915,2658995-2659102,265... 72 4e-13
03_06_0362 + 33379489-33379624,33380161-33380423,33380524-333806... 69 3e-12
02_01_0024 + 159595-159801,159892-160017,160201-160338,160431-16... 50 1e-06
06_01_0097 - 810283-810296,810398-810521,810974-811066,811144-81... 49 2e-06
03_01_0305 - 2383187-2383298,2383606-2383684,2383762-2383867,238... 48 4e-06
10_08_0289 + 16534063-16534100,16534219-16534243,16534847-165349... 48 7e-06
05_06_0240 - 26629218-26629323,26629412-26629490,26629656-266297... 46 2e-05
12_01_1011 + 10292709-10292765,10293003-10293156,10294062-102941... 41 8e-04
03_06_0760 - 36067752-36068045,36068260-36068711,36069263-360695... 41 8e-04
03_01_0281 + 2160480-2162003 28 5.8
>03_05_0339 +
23287620-23287676,23287784-23287849,23287937-23288048,
23288240-23288368,23288795-23288866,23289245-23289360,
23289494-23289570,23289788-23290273,23290373-23290688,
23290769-23290915
Length = 525
Score = 170 bits (414), Expect = 6e-43
Identities = 88/156 (56%), Positives = 112/156 (71%)
Frame = +3
Query: 90 RILKNXXXXXXXXXXRMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGA 269
R+LK+ RM++FIGA+AI DLVK+TLGPKGMDKIL S GR V VTNDGA
Sbjct: 3 RVLKDDAVEEKGERARMAAFIGAMAIADLVKTTLGPKGMDKILQSTGRGRS-VTVTNDGA 61
Query: 270 TILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIA 449
TILKS+ +DNPAAK+LVD+SKVQD+EVGDGTTSV V KL+ K+HP TIIA
Sbjct: 62 TILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVNMKIHPMTIIA 121
Query: 450 GWRIASDAAKQALAEASFDHQKNLNEASLRVDLENI 557
G+R+A + A+ AL E + D+++N+++ R DL NI
Sbjct: 122 GYRMAVECARNALLERTMDNKENIDK--FRSDLMNI 155
>05_07_0067 +
27463703-27463705,27464309-27464365,27464779-27464844,
27464985-27465096,27465281-27465409,27466076-27466191,
27466364-27466440,27466678-27467163,27467255-27467570,
27467618-27467797
Length = 513
Score = 144 bits (350), Expect = 3e-35
Identities = 77/137 (56%), Positives = 92/137 (67%)
Frame = +3
Query: 90 RILKNXXXXXXXXXXRMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGA 269
R+LK+ RM+SF+G +AI DLVK+TLGPKGMDKIL S GR V VTNDGA
Sbjct: 4 RLLKDDATEEKGERARMASFVGGMAISDLVKTTLGPKGMDKILQSTGRGRS-VTVTNDGA 62
Query: 270 TILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIA 449
TILKS+ +DNPAAK+LVD+SKVQD+EVGDGTTSV V KL+ K+HP TIIA
Sbjct: 63 TILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVNMKIHPMTIIA 122
Query: 450 GWRIASDAAKQALAEAS 500
+ SD A+ S
Sbjct: 123 D-KFRSDLMNIAMTTLS 138
>06_03_0477 -
21250811-21250981,21251261-21251374,21251447-21251613,
21252051-21252153,21252315-21252367,21252438-21252570,
21252835-21253183,21253685-21254003,21254519-21254717
Length = 535
Score = 95.1 bits (226), Expect = 3e-20
Identities = 50/113 (44%), Positives = 70/113 (61%)
Frame = +3
Query: 162 AIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKILVDMSKVQD 341
A+ +++++LGPKGMDK+L S G V +TNDGATIL+ + VDN AK++V++S QD
Sbjct: 39 AVARILRTSLGPKGMDKMLQS---PDGDVTITNDGATILEQMDVDNQIAKLMVELSCSQD 95
Query: 342 EEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAEAS 500
E+GDGTT V V KL+E+ +HP I G+ +AS A L S
Sbjct: 96 YEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYELASRIAFDHLEHIS 148
>06_03_1193 -
28298656-28298754,28299303-28299377,28299456-28299544,
28299679-28299760,28300385-28300474,28300557-28300655,
28300733-28300852,28300968-28301084,28301174-28301309,
28301415-28301584,28301744-28301947,28302032-28302157,
28302841-28303101,28303215-28303229
Length = 560
Score = 92.7 bits (220), Expect = 2e-19
Identities = 49/131 (37%), Positives = 78/131 (59%), Gaps = 1/131 (0%)
Frame = +3
Query: 138 MSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKIL 317
+S+ + D V++TLGP+GMDK++ + G ++NDGATI++ + + +PAAKIL
Sbjct: 26 VSNINACTVVADTVRTTLGPRGMDKLIHD---DKGGTTISNDGATIMRLLDIIHPAAKIL 82
Query: 318 VDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAE- 494
VD++K QD EVGDGTT+V + IE +HP ++I +R A A + + +
Sbjct: 83 VDIAKSQDSEVGDGTTTVVLLAAEFLKEAKPYIEDGVHPHSLIRSYRTAGHLAIEKVKDL 142
Query: 495 ASFDHQKNLNE 527
A+ K+L E
Sbjct: 143 ATSIEGKSLEE 153
>06_03_0353 +
19810945-19810975,19811308-19811369,19811741-19811813,
19813292-19813359,19813496-19813565,19813908-19813976,
19814065-19814136,19814247-19814320,19814420-19814697,
19814804-19815188,19815268-19815393,19815583-19815687,
19815986-19815994,19817040-19817114,19817202-19817390
Length = 561
Score = 90.2 bits (214), Expect = 1e-18
Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 1/156 (0%)
Frame = +3
Query: 72 VSLN-PIRILKNXXXXXXXXXXRMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQV 248
++LN P+ +LK+ ++ A A+ D++++TLGP+ M K+L+ SG +
Sbjct: 1 MALNAPVLVLKDSLKRESGTKVHHANIQAAKAVADIIRTTLGPRSMLKMLLDA---SGGI 57
Query: 249 EVTNDGATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKL 428
VTNDG IL+ I + +PAAK ++++S+ QDEEVGDGTTSV V I++
Sbjct: 58 VVTNDGNAILREIDIAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEAFIDKHY 117
Query: 429 HPQTIIAGWRIASDAAKQALAEASFDHQKNLNEASL 536
HP I + A + A L + + N A L
Sbjct: 118 HPTVICRAYTKALEDALAVLDKIAMHVDVNDRAAML 153
>02_02_0253 -
8325437-8325628,8325705-8325779,8325933-8326037,
8326249-8326374,8326451-8326835,8326931-8327208,
8327294-8327367,8327476-8327547,8327637-8327705,
8340132-8340201,8340806-8340873,8341571-8341643,
8341807-8341868,8342168-8342198
Length = 559
Score = 88.2 bits (209), Expect = 4e-18
Identities = 47/135 (34%), Positives = 74/135 (54%)
Frame = +3
Query: 84 PIRILKNXXXXXXXXXXRMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTND 263
P+ +LK+ ++ A A+ D++++TLGP+ M K+L+ +G + VTND
Sbjct: 6 PVLVLKDSLKRESGTKVHHANIQAAKAVADIIRTTLGPQSMLKMLLDA---AGGIVVTND 62
Query: 264 GATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTI 443
G IL+ + + +PAAK ++++S+ QDEEVGDGTTSV V I++ HP I
Sbjct: 63 GNCILRELDLAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAQAFIDKNYHPTVI 122
Query: 444 IAGWRIASDAAKQAL 488
+ A D A L
Sbjct: 123 CRAYTKALDDALSVL 137
>04_04_0729 +
27612106-27612195,27612284-27612370,27612469-27612528,
27612554-27612688,27612769-27612864,27613149-27613214,
27613647-27613864,27614093-27614189,27614605-27614691,
27614892-27615026,27615121-27615225,27615717-27615845,
27615925-27616028,27616598-27616688,27616774-27616857
Length = 527
Score = 84.2 bits (199), Expect = 6e-17
Identities = 36/74 (48%), Positives = 54/74 (72%)
Frame = +3
Query: 240 GQVEVTNDGATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIE 419
G V +TNDGATIL+ + V++PAAK+LV+++++QD EVGDGTTSV + L+
Sbjct: 7 GDVTITNDGATILRMLEVEHPAAKVLVELAELQDREVGDGTTSVVIIAAELLKRGNDLVR 66
Query: 420 QKLHPQTIIAGWRI 461
K+HP +II+G+R+
Sbjct: 67 NKIHPTSIISGYRL 80
>02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949
Length = 550
Score = 75.8 bits (178), Expect = 2e-14
Identities = 39/93 (41%), Positives = 57/93 (61%)
Frame = +3
Query: 156 AIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKILVDMSKV 335
A A+ D V+++LGP+GMDK ++S G +V +TNDGATIL + + PAA++L ++S+
Sbjct: 35 ARAVADAVRTSLGPRGMDK-MISSGEQ--EVIITNDGATILSRMSLLQPAARMLAELSRS 91
Query: 336 QDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHP 434
QD GDGTT+V V L+ HP
Sbjct: 92 QDAAAGDGTTTVVVLAGSLLRRAQSLLSAGAHP 124
>10_08_0620 - 19321612-19323237
Length = 541
Score = 72.9 bits (171), Expect = 2e-13
Identities = 37/92 (40%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Frame = +3
Query: 162 AIGDLVKSTLGPKGMDKILVSCGRNSGQ-VEVTNDGATILKSIGVDNPAAKILVDMSKVQ 338
A+ +++LGP+GMDK++ S Q V +TNDGATIL + + PAA++L D+S+ Q
Sbjct: 37 AVAAAARTSLGPRGMDKMISSSSSGGDQAVIITNDGATILSRMPLLQPAARMLADLSRSQ 96
Query: 339 DEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHP 434
D GDGTT+V V L+ HP
Sbjct: 97 DAAAGDGTTTVVVLAGSLLRRAQSLLSAGAHP 128
>05_01_0337 -
2658647-2658722,2658797-2658915,2658995-2659102,
2659187-2659255,2659561-2659655,2659740-2659944,
2660125-2660211,2660291-2660405,2660696-2660802,
2661054-2661146,2661243-2661290,2661345-2661544,
2661993-2662128,2662228-2662291,2662779-2662912
Length = 551
Score = 71.7 bits (168), Expect = 4e-13
Identities = 36/111 (32%), Positives = 62/111 (55%)
Frame = +3
Query: 156 AIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKILVDMSKV 335
A + D++K+ LGPKG K+LV +G +++T DG T+LK + + NP A ++ +
Sbjct: 26 AKGLQDVLKTNLGPKGTIKMLVG---GAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVA 82
Query: 336 QDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQAL 488
QD+ GDGTTS + + I++ HP+ ++ G+ +A A + L
Sbjct: 83 QDDTSGDGTTSTVLFIGELMKQSERCIDEGTHPRFLVDGFDVAKRATLEFL 133
>03_06_0362 +
33379489-33379624,33380161-33380423,33380524-33380670,
33380753-33380914,33381681-33381758,33382329-33382462,
33382702-33382774,33382852-33382929,33383002-33383124,
33383223-33383317,33383723-33383932,33384115-33384172,
33384268-33384333
Length = 540
Score = 68.9 bits (161), Expect = 3e-12
Identities = 38/117 (32%), Positives = 63/117 (53%)
Frame = +3
Query: 174 LVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKILVDMSKVQDEEVG 353
+ +++LGP GM+K++++ + ++ VTND ATI+ + V +PAAKILV + Q EE+G
Sbjct: 37 ITRTSLGPNGMNKMVIN---HLDKLFVTNDAATIVNELEVQHPAAKILVLAGRAQQEEIG 93
Query: 354 DGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAEASFDHQKNLN 524
DG +LI LHP II G+ A + + L + +N++
Sbjct: 94 DGANLTISFAGELLEKAEELIRMGLHPSEIIIGYTKAINKTVEILEDLVEKGSENMD 150
>02_01_0024 +
159595-159801,159892-160017,160201-160338,160431-160526,
160958-161200,161249-161537,161612-161781,161975-162052,
162156-162227,162345-162449,162555-162647,162737-162829,
163109-163235,163317-163330
Length = 616
Score = 50.0 bits (114), Expect = 1e-06
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 4/120 (3%)
Frame = +3
Query: 153 GAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNP----AAKILV 320
G + DLV TLGPKG + +L S G ++ NDG T+ K + +++P AK++
Sbjct: 71 GVNKLADLVGVTLGPKGRNVVLES---KYGSPKIVNDGVTVAKEVELEDPVENIGAKLVR 127
Query: 321 DMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAEAS 500
+ ++ GDGTT+ V K++ +P I G + A L + S
Sbjct: 128 QAAAKTNDLAGDGTTTSVVLAQGMITEGVKVVAAGANPVQITRGIEKTAKALVSELQKMS 187
>06_01_0097 -
810283-810296,810398-810521,810974-811066,811144-811236,
811410-811514,811661-811732,811857-811934,812210-812379,
812507-812741,812832-813074,813243-813338,813445-813582,
814014-814139,814235-814453
Length = 601
Score = 49.2 bits (112), Expect = 2e-06
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 4/120 (3%)
Frame = +3
Query: 153 GAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPA----AKILV 320
G + DLV TLGPKG + +L S G + NDG T+ + + +++P AK++
Sbjct: 75 GVNKLADLVGVTLGPKGRNVVLES---KYGSPRIVNDGVTVAREVELEDPVENIGAKLVR 131
Query: 321 DMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAEAS 500
+ ++ GDGTT+ V K++ +P I G + A + L + S
Sbjct: 132 QAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVEELKKLS 191
>03_01_0305 -
2383187-2383298,2383606-2383684,2383762-2383867,
2383941-2384044,2384141-2384240,2384533-2384628,
2384724-2384801,2385355-2385423,2385511-2385591,
2385670-2385759,2385859-2385945,2386022-2386126,
2386591-2386686,2386796-2386971,2387225-2387384,
2387898-2388029,2388236-2388260,2389023-2389174
Length = 615
Score = 48.4 bits (110), Expect = 4e-06
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 4/110 (3%)
Frame = +3
Query: 153 GAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIG----VDNPAAKILV 320
G + D VK T+GPKG ++ ++ G +VT DG T+ KSI V N A ++
Sbjct: 88 GVEELADAVKVTMGPKGRTVVIE---QSFGAPKVTKDGVTVAKSIEFSNRVKNVGASLVK 144
Query: 321 DMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASD 470
++ ++ GDGTT TV K + ++ + G +A D
Sbjct: 145 QVANATNDTAGDGTTCATVLTKAIFAEGCKSVAAGMNAMDLRRGISMAVD 194
>10_08_0289 +
16534063-16534100,16534219-16534243,16534847-16534978,
16535255-16535441,16536014-16536189,16536282-16536377,
16536511-16536615,16536654-16536683,16536698-16536784,
16536874-16536963,16537033-16537113,16537200-16537268,
16537413-16537490,16537578-16537673,16537981-16538080,
16538208-16538311,16538396-16538501,16538595-16538673,
16538861-16538963
Length = 593
Score = 47.6 bits (108), Expect = 7e-06
Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 10/117 (8%)
Frame = +3
Query: 153 GAIAIGDLVKSTLGPKGMDKILVSCGRNS------GQVEVTNDGATILKSIG----VDNP 302
G + D VK T+GPK + + GRN G +VT DG T+ KSI V N
Sbjct: 50 GVEELADAVKVTMGPKIGLNVSIMQGRNVVIEQSYGSPKVTKDGVTVAKSIEFKDRVKNV 109
Query: 303 AAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDA 473
A ++ ++ ++ GDGTT TV K + ++ + G +A DA
Sbjct: 110 GASLVKQVANATNDTAGDGTTCATVLTKAIFTEGCKSVAAGMNAMDLRRGISMAVDA 166
>05_06_0240 -
26629218-26629323,26629412-26629490,26629656-26629761,
26629844-26629947,26630069-26630168,26630256-26630351,
26630464-26630541,26630603-26630671,26630766-26630846,
26630879-26630935,26631016-26631105,26631192-26631278,
26631690-26631794,26631899-26631994,26632222-26632397,
26632847-26633006,26633151-26633600
Length = 679
Score = 46.0 bits (104), Expect = 2e-05
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Frame = +3
Query: 153 GAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSI----GVDNPAAKILV 320
G + D VK T+GPKG + I+ R+ +VT DG T+ KSI N A ++
Sbjct: 135 GVNDLADAVKVTMGPKGRNVII---ERSHRAPKVTKDGVTVAKSIEFEDSAKNVGANLVK 191
Query: 321 DMSKVQDEEVGDGTTSVTV 377
+++ ++ GDGTT TV
Sbjct: 192 QVAEATNKVAGDGTTCATV 210
>12_01_1011 +
10292709-10292765,10293003-10293156,10294062-10294183,
10294288-10294495,10294644-10294789,10294920-10295226,
10295666-10296117,10296388-10296678
Length = 578
Score = 40.7 bits (91), Expect = 8e-04
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Frame = +3
Query: 153 GAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGV----DNPAAKILV 320
G + + V TLGP+G + +L G +V NDG TI ++I + +N A ++
Sbjct: 55 GVEKLANAVGVTLGPRGRNVVL----DEYGSPKVVNDGVTIARAIELYDPMENAGAALIR 110
Query: 321 DMSKVQDEEVGDGTTSVTV 377
+++ ++ GDGTT+ +V
Sbjct: 111 EVASKTNDSAGDGTTTASV 129
>03_06_0760 -
36067752-36068045,36068260-36068711,36069263-36069569,
36069719-36069864,36069989-36070196,36070339-36070460,
36070621-36070789,36070875-36070931
Length = 584
Score = 40.7 bits (91), Expect = 8e-04
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Frame = +3
Query: 135 RMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGV----DNP 302
R S G + V TLGP+G + +L G +V NDG TI ++I + +N
Sbjct: 54 RSSLQAGVEKLAAAVAVTLGPRGRNVVL----DEFGSPKVVNDGVTIARAIELADPMENA 109
Query: 303 AAKILVDMSKVQDEEVGDGTTSVTV 377
A ++ +++ ++ GDGTT+ +V
Sbjct: 110 GAALIREVASKTNDSAGDGTTTASV 134
>03_01_0281 + 2160480-2162003
Length = 507
Score = 27.9 bits (59), Expect = 5.8
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 231 SRRKLRSYPFLWDLKYSLPNLLWQ*HR-*NWTSEQLQLSPLLLHF*G 94
S+RK + P W L LP+LL HR +W + L S L F G
Sbjct: 26 SKRKNTAIPVCWPLIGMLPDLLANRHRIHDWITSLLTASQLNFRFTG 72
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,372,262
Number of Sequences: 37544
Number of extensions: 213407
Number of successful extensions: 427
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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