Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6350
         (495 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|...    29   0.29 
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po...    25   4.7  
SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar...    25   4.7  
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    25   6.3  

>SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 104

 Score = 29.5 bits (63), Expect = 0.29
 Identities = 20/74 (27%), Positives = 33/74 (44%)
 Frame = +3

Query: 60  FESSDAPSNASRFLLFTGANAVSIGKTTFLHLIVHARLFVFDSCQCLKLPKFRGMSQPSM 239
           F SSD P+N SR  +F   N + +  + +L+L+  A +       C   P F  +     
Sbjct: 15  FASSDKPNNCSRKNMFFLKNIIVL--SNYLYLLYKAWIVCTTISLCCDFPLFNFLFIAIP 72

Query: 240 SFSISLRTESTFSW 281
            F+  L  +S+  W
Sbjct: 73  YFTEILYNDSSLLW 86


>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -1

Query: 396 LVMKPHPKPQFIAGLLSFNVDVSSSVMIPVKVVQKLQSPKK 274
           LV KP+ +   IAGL +    +  +V++P+K+ Q     +K
Sbjct: 120 LVEKPNVRWDDIAGLENAKEALKETVLLPIKLPQLFSHGRK 160


>SPCC126.01c ||SPCC576.18c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 369

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -3

Query: 370 TIYRWFAEFQRRRVKLSDDPRQGRPKTAVTQENVDSVRKLI 248
           TI  W  E+     +  D P  G P T +T E +  + +L+
Sbjct: 327 TIRVWDLEYSADNNEADDHPSLGPPSTKLTAEELAELEELM 367


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 66  SSDAPSNASRFLLFTGANAVSIGKTTFLHLIVH 164
           +SD+     R ++ TG      GKTT  H+I H
Sbjct: 408 TSDSDRPDKRIMMLTGL--AGAGKTTLAHVIAH 438


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,091,704
Number of Sequences: 5004
Number of extensions: 40956
Number of successful extensions: 116
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)