Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6350
         (495 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0858 + 6503701-6504069,6505114-6505231,6505485-6505531           31   0.67 
06_03_0712 + 23803597-23803945,23804118-23805479,23805743-238058...    29   2.1  
11_01_0632 - 5069425-5069441,5070656-5070809,5070889-5071050,507...    29   2.7  
09_01_0174 + 2504058-2504253,2504929-2505076,2505265-2505456,250...    28   3.6  
05_04_0057 + 17543016-17543312                                         28   3.6  
01_06_1516 - 37908284-37908497,37909666-37909733,37909809-379101...    28   3.6  
12_01_0335 - 2583476-2583493,2583919-2583965,2584151-2584274,258...    27   8.3  
09_06_0047 + 20470756-20470817,20472927-20473833,20473932-20474555     27   8.3  

>06_01_0858 + 6503701-6504069,6505114-6505231,6505485-6505531
          Length = 177

 Score = 30.7 bits (66), Expect = 0.67
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 129 WIPHSLL*RAKSGSRYLGRQNSQKIP-RRILKCC 31
           W PHSLL     G   +G +   +IP R +L+CC
Sbjct: 48  WSPHSLLSTVCHGIGLVGGERGARIPLRLVLRCC 81


>06_03_0712 +
           23803597-23803945,23804118-23805479,23805743-23805811,
           23806050-23806330,23806817-23807076,23807521-23807689,
           23807796-23808068,23808251-23808499
          Length = 1003

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = -3

Query: 391 DEAPSKTTIYRWFAEFQRRRVKLSDDPRQGRPKTAVTQENVDSVRKLIEKDIDGCDIPRN 212
           D APS  +      +FQ  +V  S+D       T+ ++ ++D + K +E    GC++P N
Sbjct: 238 DVAPSAASDAESVDQFQEPKV-CSEDHETPESGTS-SESSLDELLKTMESKDQGCEMPAN 295

Query: 211 L 209
           L
Sbjct: 296 L 296


>11_01_0632 -
           5069425-5069441,5070656-5070809,5070889-5071050,
           5071270-5072199
          Length = 420

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -3

Query: 184 SNTNNLA*TIRCKKVVFPMDTAFAPVKSKKRLALL 80
           S   NLA T  CK  +F  D  + P  SK +  LL
Sbjct: 297 SEAKNLALTAECKTFIFKRDLQWCPTFSKLKTLLL 331


>09_01_0174 +
           2504058-2504253,2504929-2505076,2505265-2505456,
           2505878-2506006,2506368-2506537,2506946-2507076,
           2507391-2507468
          Length = 347

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 7   SSPDTMLYTAFEDPAWNLLRVLTPQVTRAA 96
           SSPD ++   + DP+W  +  L P V  +A
Sbjct: 215 SSPDELIGWTYADPSWARIAALVPVVVSSA 244


>05_04_0057 + 17543016-17543312
          Length = 98

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 271 VDSVRKLIEKDIDGCDIPRNLGNFRHW 191
           VDSV  L+E ++D C  P   G  R W
Sbjct: 37  VDSVPSLVEVEVDRCGPPGRRGGRRWW 63


>01_06_1516 -
           37908284-37908497,37909666-37909733,37909809-37910186,
           37910315-37910393,37910433-37910749
          Length = 351

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +3

Query: 54  ESFESSDAPS-NASRFLLFTGANAVSIGKTTFLHLIVHARLFVFDSCQCLKLP 209
           E  + +D+P+ + ++ L F     +S+GKTTFL  I +  + + D  + +  P
Sbjct: 30  EELKGTDSPNVSKNKRLTFCVEGNISVGKTTFLQRIANETIELRDLVEIVPEP 82


>12_01_0335 -
           2583476-2583493,2583919-2583965,2584151-2584274,
           2584421-2584665,2585281-2585404,2585424-2585456
          Length = 196

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = -3

Query: 268 DSVRKLIEKDIDGCDIPRNLGNFRHWHESNTNNLA*TIRCKKVVFPMDTAFAPVK 104
           D +  LI  +   CD PR +   +     + ++   T++CK  +   DTA A  K
Sbjct: 111 DFLSCLICMEASQCDDPRYIPKHKFGRHMSRHHSKATVKCKDCLLAFDTAAAAGK 165


>09_06_0047 + 20470756-20470817,20472927-20473833,20473932-20474555
          Length = 530

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -3

Query: 121 AFAPVKSKKRLALLGASELSKDSTQD--PQMLYTTLYQVTNA 2
           AFAPV++ +  AL+ A+  + D+  D     L   LY  TNA
Sbjct: 167 AFAPVRAAEAAALVAATRRAADAAADGGAVELRDLLYSYTNA 208


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,485,247
Number of Sequences: 37544
Number of extensions: 260423
Number of successful extensions: 642
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)