Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6350
         (495 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    43   2e-06
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     24   0.77 
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    24   1.0  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   1.8  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   3.1  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   5.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.2  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 42.7 bits (96), Expect = 2e-06
 Identities = 22/81 (27%), Positives = 40/81 (49%)
 Frame = -3

Query: 481 EKIQERMIYYDFRSGLTQKQCLNRMISAFGDEAPSKTTIYRWFAEFQRRRVKLSDDPRQG 302
           E  +  +++Y FR G    Q   ++ + +GDEA  +     WF +F+     L D+ R G
Sbjct: 6   EHYRHILLFY-FRKGKNASQAHKKLCAVYGDEALKERQCQNWFDKFRSGDFSLKDEKRSG 64

Query: 301 RPKTAVTQENVDSVRKLIEKD 239
           RP     + + D ++ +I+ D
Sbjct: 65  RP----VEVDDDLIKAIIDSD 81



 Score = 24.2 bits (50), Expect = 0.77
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 225 TYREI*ATLDIGMSQIQIILHEQLGVKKLFSRWIPHSL 112
           T REI   L +  + I+  L +QLG  +    W+PH L
Sbjct: 85  TTREIAEKLHVSHTCIENHL-KQLGYVQKLDTWVPHEL 121


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 24.2 bits (50), Expect = 0.77
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 268 DSVRKLIEKDIDGCDIPRNLGNFRHWHESNTNNL 167
           D +R  +++D    +    LGNF   HES  N L
Sbjct: 81  DKIRVFLDEDYSSAEHFTALGNFYFVHESLKNVL 114


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 75  APSNASRFLLFTGANAVSIGKTTFLHLIVHAR 170
           A +  +RF LFT  + + IG+T  + LI + R
Sbjct: 313 AKNMENRFPLFTTVHRICIGETMPMELIENLR 344


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -2

Query: 128 GYRIRSCEEQKAARVTWGVRTLKRFHAGS--SNAVYNIVSGDE 6
           G +++ C  + A    WGV+T+K    GS  +  V  +++ +E
Sbjct: 492 GTKMQFCIFRTANGRGWGVKTMKTIKKGSFVTQYVGEVITNEE 534


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 21  NVVYSI*GSCVESFESSDAPSNASRFLLFTGANAVSIG 134
           N + SI  SCV +F +S   S  S+F +    N+   G
Sbjct: 243 NTLLSISASCVIAFATSALVSKDSKFNMVHIQNSTLAG 280


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = -3

Query: 232 GCDIPRNLGNFRHWHESNTNNLA*TIR 152
           G D P+  G  + W + + NN    +R
Sbjct: 452 GIDTPKKDGPTKSWSDESLNNALDALR 478


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +1

Query: 7    SSPDTMLYTAFEDPAWNLLRVLTPQVTRAAFCSSQERM 120
            SSP T L      PA++   V  PQ  +    S Q R+
Sbjct: 1257 SSPATALMLQHAPPAYSCGTVSVPQQQQLPPSSPQPRL 1294


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,039
Number of Sequences: 438
Number of extensions: 2760
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13667319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)