Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6349
(622 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo... 28 1.3
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr... 27 2.2
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 2.2
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc... 27 2.9
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 27 2.9
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 26 3.8
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 26 3.8
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 25 6.7
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 25 6.7
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ... 25 8.8
SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy... 25 8.8
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe... 25 8.8
>SPBC651.09c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 560
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 302 TSPRPSPSSKASLYLTPSTDP 364
TSP+PSPS S+ TP +P
Sbjct: 469 TSPQPSPSLSTSIMSTPKLNP 489
>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 172
Score = 27.1 bits (57), Expect = 2.2
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 480 PRSR-AIPSRKEGALSRTRTS*QALPPSRVLVPPALPQSRSTSPYP 614
PR R A P + A +R+ ++ ALPP + PPA P +P P
Sbjct: 2 PRRRSAAPPPRRAAPARSASTAAALPPRTMAPPPA-PSRVQQAPPP 46
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.1 bits (57), Expect = 2.2
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 394 YPVKVAVPQPYEVVKHVPYHVKEYVKV 474
Y +K+ VP P+ ++H P HV Y ++
Sbjct: 2322 YSLKLDVPLPFFALEHRPTHVISYTEL 2348
>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 26.6 bits (56), Expect = 2.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 127 QLCFLSSSSHWQPLLLPAGKLSRA 56
++ L WQP+L+P GK+ RA
Sbjct: 223 EMAHLLKDPIWQPILMPNGKVLRA 246
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 26.6 bits (56), Expect = 2.9
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +3
Query: 480 PRSRAIPSRKEGALSRTRTS*QALPPSRVLVPPALPQSRSTSP 608
PR R P +K + R L S V A PQS S+SP
Sbjct: 425 PRKRGRPPKKRQENAEIRNITPGLTDSSVHSSSATPQSESSSP 467
>SPCC63.04 |mok14||alpha-1,3-glucan synthase
Mok14|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1369
Score = 26.2 bits (55), Expect = 3.8
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 364 VPYPVEKHVPYPVKVAVPQPYEVVKHVPYHVKEYVK 471
+ YPV + P V V Q YEV V YH K+ +K
Sbjct: 304 ITYPVAETAPSLVVKVVNQDYEV--KVFYHYKDNIK 337
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 26.2 bits (55), Expect = 3.8
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 489 RAIPSRKEGALSRTRTS*QALPPSRVLVPPALPQ 590
+ +P R GA ++ + LPP++VL+ +PQ
Sbjct: 150 KPVPKRNVGAERKSTINEDLLPPNKVLLLQNIPQ 183
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 25.4 bits (53), Expect = 6.7
Identities = 14/51 (27%), Positives = 18/51 (35%), Gaps = 4/51 (7%)
Frame = +1
Query: 337 PVPYAVDRPVP----YPVEKHVPYPVKVAVPQPYEVVKHVPYHVKEYVKVP 477
P PY PV P++ H PYP P PY+ + P
Sbjct: 190 PPPYCFQSPVSPGATVPLQHHSPYPSDNGFPGHRRQTHFAPYYYPQRATSP 240
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 25.4 bits (53), Expect = 6.7
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 575 PSPTPVEKHVPLPP 616
P+PTP KH P PP
Sbjct: 734 PAPTPAVKHHPPPP 747
>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Frame = +2
Query: 554 PVKGARAPSPTPVEKHVPLP-PSR 622
P AP+ PVE VPLP P R
Sbjct: 45 PASPVTAPAAQPVESSVPLPLPKR 68
>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 370
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +1
Query: 178 GYGIDGLDVGYIG--HGQGLGGAYNYVDGGYSSGYG 279
G G D + + + HG+GL YN++ +SG G
Sbjct: 278 GIGCDNMTICIVAFLHGRGLEDWYNWITQRVNSGEG 313
>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 716
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 301 DVTKTITLVKGVPVPYAVDRP 363
DV K T+V G PYA DRP
Sbjct: 523 DVVKA-TIVNGPAAPYAEDRP 542
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,277,467
Number of Sequences: 5004
Number of extensions: 48195
Number of successful extensions: 216
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -