Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6348
(705 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical pr... 123 1e-28
U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical p... 69 3e-12
U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical p... 69 4e-12
AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical ... 67 1e-11
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 57 1e-08
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 52 3e-07
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 51 9e-07
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 40 0.001
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 36 0.037
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 36 0.037
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 36 0.037
Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical pr... 34 0.086
AJ297847-1|CAC16732.1| 619|Caenorhabditis elegans FOG-1 protein... 34 0.086
AJ297846-1|CAC16731.1| 619|Caenorhabditis elegans FOG-1 protein... 34 0.086
AC024810-13|AAK68518.1| 405|Caenorhabditis elegans Feminization... 34 0.086
AC024810-12|AAK68519.1| 619|Caenorhabditis elegans Feminization... 34 0.086
Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical pr... 34 0.11
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 33 0.20
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 33 0.20
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 33 0.26
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 33 0.26
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 33 0.26
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 33 0.26
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 33 0.26
Z71181-10|CAA94901.2| 678|Caenorhabditis elegans Hypothetical p... 32 0.46
Z71177-11|CAA94873.2| 678|Caenorhabditis elegans Hypothetical p... 32 0.46
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 32 0.46
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 31 0.61
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 31 0.61
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 31 0.61
Z82073-7|CAB04922.2| 327|Caenorhabditis elegans Hypothetical pr... 31 0.80
Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical pr... 31 0.80
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 31 0.80
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 31 0.80
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 31 0.80
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 31 0.80
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 31 0.80
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 31 0.80
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 31 0.80
Z49911-11|CAA90135.2| 452|Caenorhabditis elegans Hypothetical p... 30 1.4
Z36948-6|CAA85414.2| 452|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 30 1.9
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 30 1.9
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 30 1.9
Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z75552-9|CAA99945.2| 705|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z75551-6|CAA99937.2| 705|Caenorhabditis elegans Hypothetical pr... 29 2.4
U40956-1|AAA81756.1| 516|Caenorhabditis elegans Hypothetical pr... 29 3.2
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 29 3.2
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 29 3.2
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 29 3.2
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 29 3.2
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 29 3.2
Z68105-3|CAA92121.2| 442|Caenorhabditis elegans Hypothetical pr... 29 4.3
AL110490-7|CAD59175.1| 533|Caenorhabditis elegans Hypothetical ... 29 4.3
AL110490-6|CAB54442.2| 687|Caenorhabditis elegans Hypothetical ... 29 4.3
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 29 4.3
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 29 4.3
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 29 4.3
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 28 5.7
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 28 5.7
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 28 5.7
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 28 5.7
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 28 5.7
U41552-2|AAC69104.1| 640|Caenorhabditis elegans Hypothetical pr... 28 7.5
U41552-1|AAC69101.2| 640|Caenorhabditis elegans Hypothetical pr... 28 7.5
>Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical
protein C17E4.5 protein.
Length = 205
Score = 123 bits (297), Expect = 1e-28
Identities = 57/99 (57%), Positives = 76/99 (76%), Gaps = 1/99 (1%)
Frame = +1
Query: 340 IKARVREMEEEAEKLKQMQTEVDKQMSMG-SPPGLTSPLNMSIEEKIEADNRSVYVGNVD 516
I+ + E+EEE +KLK +Q E+ M++ S +S ++ EEK EAD +SVYVGNVD
Sbjct: 27 IEGDLNEIEEEQKKLKAIQNEMVGHMNLNTSSQSNSSQSLLTPEEKAEADAKSVYVGNVD 86
Query: 517 YGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIE 633
YGATAEE+EQHFHGCGS++RVTI C+++ GHPKGFAY+E
Sbjct: 87 YGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFAYVE 125
>U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical
protein EEED8.12 protein.
Length = 197
Score = 68.9 bits (161), Expect = 3e-12
Identities = 40/94 (42%), Positives = 56/94 (59%), Gaps = 2/94 (2%)
Frame = +1
Query: 358 EMEEEAEK--LKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATA 531
EME EAE L+Q+Q ++ K + + T EE+ D +SV++GNVD+ +T
Sbjct: 21 EMEIEAESAILEQIQNKMAKNLESAAYVPPTE------EEQKAIDAKSVFIGNVDFNSTI 74
Query: 532 EELEQHFHGCGSINRVTILCNKYDGHPKGFAYIE 633
EE+E+HF GCG I R TI +K+ K FAYIE
Sbjct: 75 EEVEEHFKGCGHIVRTTIPKDKFTKKQKNFAYIE 108
>U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical
protein EEED8.4 protein.
Length = 191
Score = 68.5 bits (160), Expect = 4e-12
Identities = 39/94 (41%), Positives = 56/94 (59%), Gaps = 2/94 (2%)
Frame = +1
Query: 358 EMEEEAEK--LKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATA 531
EME EAE L+Q+Q ++ K + + T EE+ D +SV++GNVD+ +T
Sbjct: 15 EMEIEAESAILQQIQNKMAKHLESAAYVPPTE------EEQKAIDAKSVFIGNVDFNSTI 68
Query: 532 EELEQHFHGCGSINRVTILCNKYDGHPKGFAYIE 633
EE+E+HF GCG I + TI +K+ K FAYIE
Sbjct: 69 EEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIE 102
>AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical
protein T08B6.5 protein.
Length = 177
Score = 67.3 bits (157), Expect = 1e-11
Identities = 29/56 (51%), Positives = 41/56 (73%)
Frame = +1
Query: 466 EEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIE 633
EE+ + D RSVYVGNVD+ +T E+E+HF CG + RVTI +K+ G+ K FA++E
Sbjct: 38 EEQEKTDARSVYVGNVDWKSTVSEIEEHFAVCGKVARVTIPKDKFTGYQKNFAFVE 93
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 56.8 bits (131), Expect = 1e-08
Identities = 25/52 (48%), Positives = 32/52 (61%)
Frame = +1
Query: 493 SVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEIWRQG 648
SVYVGN + T EEL F G IN V I+C++ G P+GFA+IE +G
Sbjct: 6 SVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEG 57
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 52.4 bits (120), Expect = 3e-07
Identities = 22/47 (46%), Positives = 31/47 (65%)
Frame = +1
Query: 493 SVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIE 633
SVYVGNV Y T EE+ +F G +N V I+ ++ G P+GFA++E
Sbjct: 7 SVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVE 53
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 50.8 bits (116), Expect = 9e-07
Identities = 19/47 (40%), Positives = 32/47 (68%)
Frame = +1
Query: 493 SVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIE 633
SVYVGN + T ++L +F G+++ V I+C++ G P+GFA++E
Sbjct: 5 SVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVE 51
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 40.3 bits (90), Expect = 0.001
Identities = 15/52 (28%), Positives = 30/52 (57%)
Frame = +1
Query: 478 EADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIE 633
+ RSV+VGN+ Y + + + F G++ + ++ ++ G PKG+ +IE
Sbjct: 14 DRSQRSVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIE 65
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 35.5 bits (78), Expect = 0.037
Identities = 28/91 (30%), Positives = 44/91 (48%)
Frame = +1
Query: 358 EMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEE 537
+++EEA+ K TE D+ M+MG P I+ +D + V N+ +E
Sbjct: 141 QLDEEADADKD--TEKDR-MAMGMRPD-----GRQIDRN-RSDENTCRVTNLPQEMNEDE 191
Query: 538 LEQHFHGCGSINRVTILCNKYDGHPKGFAYI 630
L F G + R+ I +K G PKGFA++
Sbjct: 192 LRDLFGKIGRVIRIFIARDKVTGLPKGFAFV 222
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 35.5 bits (78), Expect = 0.037
Identities = 12/50 (24%), Positives = 28/50 (56%)
Frame = +1
Query: 484 DNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIE 633
+++ ++VG + E+L HF G + + + ++ +G +GFA++E
Sbjct: 27 EDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVE 76
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/49 (24%), Positives = 25/49 (51%)
Frame = +1
Query: 484 DNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYI 630
+N+ V+VG + + ++L HF G ++ + +K + FA+I
Sbjct: 108 ENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFI 156
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 35.5 bits (78), Expect = 0.037
Identities = 12/50 (24%), Positives = 28/50 (56%)
Frame = +1
Query: 484 DNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIE 633
+++ ++VG + E+L HF G + + + ++ +G +GFA++E
Sbjct: 27 EDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVE 76
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/49 (24%), Positives = 25/49 (51%)
Frame = +1
Query: 484 DNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYI 630
+N+ V+VG + + ++L HF G ++ + +K + FA+I
Sbjct: 108 ENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFI 156
>Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical
protein C50B8.1 protein.
Length = 114
Score = 34.3 bits (75), Expect = 0.086
Identities = 19/65 (29%), Positives = 35/65 (53%)
Frame = +1
Query: 436 GLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPK 615
G+T+ ++ IE + + ++VY+ +V + +LE +F GSI V + + G +
Sbjct: 7 GVTTNISKLIEARPKNTGQTVYLTHVKWVTGKSQLEHYFKRYGSIQSVNMFYDPDTGLHR 66
Query: 616 GFAYI 630
GFA I
Sbjct: 67 GFASI 71
>AJ297847-1|CAC16732.1| 619|Caenorhabditis elegans FOG-1 protein
protein.
Length = 619
Score = 34.3 bits (75), Expect = 0.086
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = +1
Query: 487 NRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEIWR 642
+R+V++G + TAEE+ Q F G + VTI ++ G+PKG A + R
Sbjct: 318 HRTVFLGGLPRIVTAEEIAQMFSEFGVVLLVTIDIDQDYGYPKGAARVTFER 369
>AJ297846-1|CAC16731.1| 619|Caenorhabditis elegans FOG-1 protein
protein.
Length = 619
Score = 34.3 bits (75), Expect = 0.086
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = +1
Query: 487 NRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEIWR 642
+R+V++G + TAEE+ Q F G + VTI ++ G+PKG A + R
Sbjct: 318 HRTVFLGGLPRIVTAEEIAQMFSEFGVVLLVTIDIDQDYGYPKGAARVTFER 369
>AC024810-13|AAK68518.1| 405|Caenorhabditis elegans Feminization of
germline protein1, isoform a protein.
Length = 405
Score = 34.3 bits (75), Expect = 0.086
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = +1
Query: 487 NRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEIWR 642
+R+V++G + TAEE+ Q F G + VTI ++ G+PKG A + R
Sbjct: 104 HRTVFLGGLPRIVTAEEIAQMFSEFGVVLLVTIDIDQDYGYPKGAARVTFER 155
>AC024810-12|AAK68519.1| 619|Caenorhabditis elegans Feminization of
germline protein1, isoform b protein.
Length = 619
Score = 34.3 bits (75), Expect = 0.086
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = +1
Query: 487 NRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEIWR 642
+R+V++G + TAEE+ Q F G + VTI ++ G+PKG A + R
Sbjct: 318 HRTVFLGGLPRIVTAEEIAQMFSEFGVVLLVTIDIDQDYGYPKGAARVTFER 369
>Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical
protein F26A3.2 protein.
Length = 154
Score = 33.9 bits (74), Expect = 0.11
Identities = 13/49 (26%), Positives = 28/49 (57%)
Frame = +1
Query: 493 SVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEIW 639
++YVGN+ Y +++ + F G + RV + +++ P GF ++E +
Sbjct: 38 TLYVGNLSYYTKEDQVYELFGRAGDVRRVIMGLDRFKKTPCGFCFVEYY 86
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 33.1 bits (72), Expect = 0.20
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +1
Query: 493 SVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEIWRQ 645
S+ + N+ Y T +L + F G I V I +KY KGF ++ + +
Sbjct: 20 SLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYER 70
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 33.1 bits (72), Expect = 0.20
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +1
Query: 493 SVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEIWRQ 645
S+ + N+ Y T +L + F G I V I +KY KGF ++ + +
Sbjct: 20 SLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYER 70
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 32.7 bits (71), Expect = 0.26
Identities = 11/55 (20%), Positives = 29/55 (52%)
Frame = +1
Query: 466 EEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYI 630
+ K+ + V++G + +T E+++Q+F G + ++ +K +GF ++
Sbjct: 126 QAKLVTKTKKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFV 180
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/49 (24%), Positives = 24/49 (48%)
Frame = +1
Query: 484 DNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYI 630
D +++G + + TAE L +F G +N ++ + +GF +I
Sbjct: 43 DPGKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFI 91
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 32.7 bits (71), Expect = 0.26
Identities = 18/46 (39%), Positives = 26/46 (56%)
Frame = +1
Query: 496 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIE 633
VYVG + AT++ELE+ F G I +V + P GFA++E
Sbjct: 5 VYVGGLPSDATSQELEEIFDRFGRIRKVWVA-----RRPPGFAFVE 45
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 32.7 bits (71), Expect = 0.26
Identities = 18/46 (39%), Positives = 26/46 (56%)
Frame = +1
Query: 496 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIE 633
VYVG + AT++ELE+ F G I +V + P GFA++E
Sbjct: 5 VYVGGLPSDATSQELEEIFDRFGRIRKVWVA-----RRPPGFAFVE 45
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 32.7 bits (71), Expect = 0.26
Identities = 18/46 (39%), Positives = 26/46 (56%)
Frame = +1
Query: 496 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIE 633
VYVG + AT++ELE+ F G I +V + P GFA++E
Sbjct: 5 VYVGGLPSDATSQELEEIFDRFGRIRKVWVA-----RRPPGFAFVE 45
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 32.7 bits (71), Expect = 0.26
Identities = 11/55 (20%), Positives = 29/55 (52%)
Frame = +1
Query: 466 EEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYI 630
+ K+ + V++G + +T E+++Q+F G + ++ +K +GF ++
Sbjct: 126 QAKLVTKTKKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFV 180
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/49 (24%), Positives = 24/49 (48%)
Frame = +1
Query: 484 DNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYI 630
D +++G + + TAE L +F G +N ++ + +GF +I
Sbjct: 43 DPGKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFI 91
>Z71181-10|CAA94901.2| 678|Caenorhabditis elegans Hypothetical
protein K07C5.8 protein.
Length = 678
Score = 31.9 bits (69), Expect = 0.46
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = +1
Query: 340 IKARVREMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDY 519
+K R R EE+E+ + +V K + PPG+ S ++ + +E++ + N Y
Sbjct: 254 VKRRSRTSTEESEE--KTSNDVQKNLETDVPPGIRSAIDAAAQEELPVRRQGRRSANFGY 311
Query: 520 G 522
G
Sbjct: 312 G 312
>Z71177-11|CAA94873.2| 678|Caenorhabditis elegans Hypothetical
protein K07C5.8 protein.
Length = 678
Score = 31.9 bits (69), Expect = 0.46
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = +1
Query: 340 IKARVREMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDY 519
+K R R EE+E+ + +V K + PPG+ S ++ + +E++ + N Y
Sbjct: 254 VKRRSRTSTEESEE--KTSNDVQKNLETDVPPGIRSAIDAAAQEELPVRRQGRRSANFGY 311
Query: 520 G 522
G
Sbjct: 312 G 312
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 31.9 bits (69), Expect = 0.46
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +1
Query: 490 RSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEIWRQG 648
R++YVGN+D T + + F+ GS+ + ++ +DG +A++E G
Sbjct: 46 RTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVI---FDGSNDPYAFVEFSDHG 95
Score = 31.1 bits (67), Expect = 0.80
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +1
Query: 463 IEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTI 585
I + DN SVYVGN+ T +E+ Q F G I V I
Sbjct: 232 IYNQTSGDNTSVYVGNI-ASLTEDEIRQGFASFGRITEVRI 271
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 31.5 bits (68), Expect = 0.61
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +1
Query: 478 EADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYI 630
+ D ++VG + ++L F G I TIL +KY G KG A++
Sbjct: 25 DPDAIKLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGCAFL 75
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/54 (25%), Positives = 30/54 (55%)
Frame = +1
Query: 472 KIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIE 633
K + D++ +++G + + +E+ F G ++ VT+L DG KG A+++
Sbjct: 118 KDKMDDKKLFIGMLSKQQSEDEVRALFATFGELDEVTVL-RGADGASKGCAFVK 170
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 31.5 bits (68), Expect = 0.61
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +1
Query: 478 EADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTI 585
+ADN SVYVGN+ T +L F G I V I
Sbjct: 233 KADNTSVYVGNISQQTTDADLRDLFSTYGDIAEVRI 268
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 31.5 bits (68), Expect = 0.61
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +1
Query: 478 EADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYI 630
+ D ++VG + ++L F G I TIL +KY G KG A++
Sbjct: 25 DPDAIKLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGCAFL 75
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/54 (25%), Positives = 30/54 (55%)
Frame = +1
Query: 472 KIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIE 633
K + D++ +++G + + +E+ F G ++ VT+L DG KG A+++
Sbjct: 118 KDKMDDKKLFIGMLSKQQSEDEVRALFATFGELDEVTVL-RGADGASKGCAFVK 170
>Z82073-7|CAB04922.2| 327|Caenorhabditis elegans Hypothetical
protein W06D12.1 protein.
Length = 327
Score = 31.1 bits (67), Expect = 0.80
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = +1
Query: 373 AEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGA--TAEELEQ 546
+ K++ + D+++S PPG P N + +K + + N DY A +ELE
Sbjct: 148 SSKMQNLDVMTDRKVSDDIPPGFPRPQNNTKLQKSQKFSTDAMTSNSDYSADFLDDELED 207
Query: 547 HFHGCGSINRVTI 585
I VT+
Sbjct: 208 EVDKMSRIPSVTM 220
>Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical
protein T04A8.6 protein.
Length = 307
Score = 31.1 bits (67), Expect = 0.80
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +1
Query: 496 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYI 630
V + + +G +EL +F G++ R+ + N+ G+ KG+AY+
Sbjct: 34 VKIKRIPFGFFEKELLGYFRQFGNVLRIRVARNRRTGNHKGWAYV 78
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 31.1 bits (67), Expect = 0.80
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +1
Query: 463 IEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTI 585
I + DN SVYVGN+ T +E+ Q F G I V I
Sbjct: 119 IYNQTSGDNTSVYVGNI-ASLTEDEIRQGFASFGRITEVRI 158
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 31.1 bits (67), Expect = 0.80
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +1
Query: 463 IEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTI 585
I + DN SVYVGN+ T +E+ Q F G I V I
Sbjct: 129 IYNQTSGDNTSVYVGNI-ASLTEDEIRQGFASFGRITEVRI 168
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 31.1 bits (67), Expect = 0.80
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +1
Query: 463 IEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTI 585
I + DN SVYVGN+ T +E+ Q F G I V I
Sbjct: 200 IYNQTSGDNTSVYVGNI-ASLTEDEIRQGFASFGRITEVRI 239
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 31.1 bits (67), Expect = 0.80
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = +1
Query: 484 DNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYI 630
D+ +Y+G + Y + ++ F G + + ++ +K G KGFA++
Sbjct: 36 DSAWIYIGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGKSKGFAFL 84
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 31.1 bits (67), Expect = 0.80
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +1
Query: 496 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIE 633
+YVG++ + + L + F G I + + + GH K FA++E
Sbjct: 104 IYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVE 149
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 31.1 bits (67), Expect = 0.80
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +1
Query: 496 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIE 633
+YVG++ + + L + F G I + + + GH K FA++E
Sbjct: 104 IYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVE 149
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 31.1 bits (67), Expect = 0.80
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +1
Query: 496 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIE 633
+YVG++ + + L + F G I + + + GH K FA++E
Sbjct: 104 IYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVE 149
>Z49911-11|CAA90135.2| 452|Caenorhabditis elegans Hypothetical
protein D2089.1a protein.
Length = 452
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +1
Query: 472 KIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEIWRQ 645
K+E R+VYVGN+ G E+ + F+ + + D P +AY+E +Q
Sbjct: 157 KVEEIRRTVYVGNLPKGVDGNEVLELFNMYFGEVMYARMASGPDALPCAYAYVEFSQQ 214
>Z36948-6|CAA85414.2| 452|Caenorhabditis elegans Hypothetical
protein D2089.1a protein.
Length = 452
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +1
Query: 472 KIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEIWRQ 645
K+E R+VYVGN+ G E+ + F+ + + D P +AY+E +Q
Sbjct: 157 KVEEIRRTVYVGNLPKGVDGNEVLELFNMYFGEVMYARMASGPDALPCAYAYVEFSQQ 214
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = +1
Query: 493 SVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYI 630
++YV N++ + L HF G+I ++ ++ +G KGF ++
Sbjct: 344 NLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDE-NGRSKGFGFV 388
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = +1
Query: 493 SVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYI 630
++YV N++ + L HF G+I ++ ++ +G KGF ++
Sbjct: 344 NLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDE-NGRSKGFGFV 388
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +1
Query: 481 ADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIE 633
++++ VYVGN+ +E+E FH G I V I G FA++E
Sbjct: 6 SEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDI----KSGRGPAFAFVE 52
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +1
Query: 481 ADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIE 633
++++ VYVGN+ +E+E FH G I V I G FA++E
Sbjct: 6 SEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDI----KSGRGPAFAFVE 52
>Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical
protein Y57G11A.5 protein.
Length = 121
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 466 EEKIEADNRSVYVGNVDYGATAEEL 540
+ K +NR VYVGN+ + AT +EL
Sbjct: 9 KRKRNVENRQVYVGNMPFDATEKEL 33
>Z75552-9|CAA99945.2| 705|Caenorhabditis elegans Hypothetical
protein W04D2.6a protein.
Length = 705
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +1
Query: 385 KQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCG 564
+Q Q V QM M PG +P S ++K D+ V+VGN+ + E + + + CG
Sbjct: 17 QQQQQIVFGQMRM---PGQHTPAQQSSQQK--PDSSPVFVGNISDKCSDEFIRKILNECG 71
Query: 565 SI 570
++
Sbjct: 72 NV 73
>Z75551-6|CAA99937.2| 705|Caenorhabditis elegans Hypothetical
protein W04D2.6a protein.
Length = 705
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +1
Query: 385 KQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCG 564
+Q Q V QM M PG +P S ++K D+ V+VGN+ + E + + + CG
Sbjct: 17 QQQQQIVFGQMRM---PGQHTPAQQSSQQK--PDSSPVFVGNISDKCSDEFIRKILNECG 71
Query: 565 SI 570
++
Sbjct: 72 NV 73
>U40956-1|AAA81756.1| 516|Caenorhabditis elegans Hypothetical
protein ZK402.5 protein.
Length = 516
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +1
Query: 355 REMEEEAEKLKQ-MQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVG 507
RE+EE +++K+ + T VDK++ G+ ++I KI+A YVG
Sbjct: 401 RELEELKQQIKKSIGTNVDKKILFAELRGVFEAFLITINRKIKATACPCYVG 452
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = +1
Query: 490 RSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYI 630
+ +YV V T + L ++F G++ + I+ +K P+GF ++
Sbjct: 114 KRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFV 160
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = +1
Query: 490 RSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYI 630
+ +YV V T + L ++F G++ + I+ +K P+GF ++
Sbjct: 76 KRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFV 122
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = +1
Query: 490 RSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYI 630
+ +YV V T + L ++F G++ + I+ +K P+GF ++
Sbjct: 76 KRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFV 122
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = +1
Query: 490 RSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYI 630
+ +YV V T + L ++F G++ + I+ +K P+GF ++
Sbjct: 114 KRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFV 160
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = +1
Query: 490 RSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYI 630
+ +YV V T + L ++F G++ + I+ +K P+GF ++
Sbjct: 114 KRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFV 160
>Z68105-3|CAA92121.2| 442|Caenorhabditis elegans Hypothetical
protein F13E6.4 protein.
Length = 442
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 565 IHNHESAAPAPQPWLHNQHYQH 500
++N +S+A P P HN H+QH
Sbjct: 112 VNNGQSSATVPHPSHHNVHHQH 133
>AL110490-7|CAD59175.1| 533|Caenorhabditis elegans Hypothetical
protein Y48B6A.6b protein.
Length = 533
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 349 RVREMEEEAEKLKQMQTEVDKQMSMGSPPGLTSP 450
R+++ EE E L Q Q +V Q+ PP TSP
Sbjct: 171 RMKKYTEEMESLVQKQVDVLDQIMSSPPPPPTSP 204
>AL110490-6|CAB54442.2| 687|Caenorhabditis elegans Hypothetical
protein Y48B6A.6a protein.
Length = 687
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 349 RVREMEEEAEKLKQMQTEVDKQMSMGSPPGLTSP 450
R+++ EE E L Q Q +V Q+ PP TSP
Sbjct: 171 RMKKYTEEMESLVQKQVDVLDQIMSSPPPPPTSP 204
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/47 (21%), Positives = 24/47 (51%)
Frame = +1
Query: 490 RSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYI 630
R +++G + + T E+L +F G + ++ + H +GF ++
Sbjct: 49 RKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFV 95
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/47 (21%), Positives = 24/47 (51%)
Frame = +1
Query: 490 RSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYI 630
R +++G + + T E+L +F G + ++ + H +GF ++
Sbjct: 69 RKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFV 115
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/47 (21%), Positives = 24/47 (51%)
Frame = +1
Query: 490 RSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYI 630
R +++G + + T E+L +F G + ++ + H +GF ++
Sbjct: 70 RKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFV 116
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = +1
Query: 493 SVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYI 630
++YV N+D + L++ F G+I ++ ++ +G KGF ++
Sbjct: 318 NLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDE-NGRSKGFGFV 362
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +1
Query: 481 ADNRSVYVGNVDYGATAEELEQHFHGCGSINRV 579
ADN SVYVGN+ +E+ + F G IN V
Sbjct: 253 ADNTSVYVGNI-ANLGEDEIRRAFDRFGPINEV 284
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = +1
Query: 493 SVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYI 630
++YV N+D + L++ F G+I ++ ++ +G KGF ++
Sbjct: 258 NLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDE-NGRSKGFGFV 302
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = +1
Query: 493 SVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYI 630
++YV N+D + L++ F G+I ++ ++ +G KGF ++
Sbjct: 255 NLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDE-NGRSKGFGFV 299
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = +1
Query: 493 SVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYI 630
++YV N+D + L++ F G+I ++ ++ +G KGF ++
Sbjct: 318 NLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDE-NGRSKGFGFV 362
>U41552-2|AAC69104.1| 640|Caenorhabditis elegans Hypothetical
protein K07E3.4a protein.
Length = 640
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +1
Query: 514 DYGATAEELEQHFH--GCGSINRVTILCNKYDGHPKGFAYI 630
+YGA + +H+ G G++ L N GHPK F ++
Sbjct: 480 EYGAFDAVVSEHWSQGGAGAVALANSLVNATTGHPKQFKFL 520
>U41552-1|AAC69101.2| 640|Caenorhabditis elegans Hypothetical
protein K07E3.4b protein.
Length = 640
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +1
Query: 514 DYGATAEELEQHFH--GCGSINRVTILCNKYDGHPKGFAYI 630
+YGA + +H+ G G++ L N GHPK F ++
Sbjct: 480 EYGAFDAVVSEHWSQGGAGAVALANSLVNATTGHPKQFKFL 520
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,153,754
Number of Sequences: 27780
Number of extensions: 295568
Number of successful extensions: 1005
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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