Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6348
         (705 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    25   0.92 
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   4.9  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              22   6.5  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   8.6  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   8.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.6  

>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 75  QFSNYSQYSNYIKSQFDPRYL 13
           ++SNY+ Y+NY K  +   Y+
Sbjct: 90  KYSNYNNYNNYNKKLYYKNYI 110


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -1

Query: 75  QFSNYSQYSNYIKSQFD 25
           ++SNY+ Y+NY  + ++
Sbjct: 323 KYSNYNNYNNYNNNNYN 339


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/28 (25%), Positives = 15/28 (53%)
 Frame = +3

Query: 15  NILDQIVILCNSNTDCNLKTVLFVVMNC 98
           N  DQ+++ C+  +D N+   +  +  C
Sbjct: 95  NETDQLIVECSPISDANVHIKISKIFQC 122


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = -1

Query: 75  QFSNYSQYSNYIKSQFDPRY 16
           ++SNY+ Y+N   + ++  Y
Sbjct: 90  KYSNYNNYNNNYNNNYNNNY 109


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = -1

Query: 75  QFSNYSQYSNYIKSQFDPRY 16
           ++SNY+ Y+N   + ++  Y
Sbjct: 90  KYSNYNNYNNNYNNNYNNNY 109


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 336  SYQGPSAGDGR 368
            SY+GPSA  GR
Sbjct: 1353 SYRGPSASGGR 1363


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,415
Number of Sequences: 438
Number of extensions: 3935
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)