Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6347
(674 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0359 - 28269236-28269541,28270857-28270919,28271439-282714... 33 0.28
04_04_1647 + 35032328-35033803 31 0.84
05_04_0337 - 20372378-20373094,20373320-20373379,20373992-203742... 30 1.9
05_05_0036 - 21758409-21758531,21758891-21759206,21759964-217611... 29 4.5
03_01_0564 - 4176177-4178096 29 4.5
07_03_0635 + 20151861-20152249,20152589-20152709,20154914-201549... 28 5.9
04_04_0326 - 24407201-24407374,24407397-24407460,24408266-244086... 28 7.8
01_06_1252 - 35748000-35748173,35748243-35748375,35749771-357498... 28 7.8
>02_05_0359 -
28269236-28269541,28270857-28270919,28271439-28271459,
28271660-28271716,28271789-28271874,28271982-28272039,
28272176-28272311,28272799-28273073,28273564-28273602,
28274052-28274143,28274422-28274454,28275041-28275088,
28275191-28275323
Length = 448
Score = 32.7 bits (71), Expect = 0.28
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +2
Query: 269 SGCRQPS--CQWRPSPDPGQVRSCPRCPSLHTG 361
SGCR+ WR SP ++ CP C HTG
Sbjct: 403 SGCREAGGPWTWRESPASRAMQKCPACKRTHTG 435
>04_04_1647 + 35032328-35033803
Length = 491
Score = 31.1 bits (67), Expect = 0.84
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +2
Query: 272 GCRQPSCQWRPSPDP-GQVRSCPRCP 346
GCR PSC W SPD R+ CP
Sbjct: 150 GCRNPSCLWIHSPDHLSDCRAASSCP 175
>05_04_0337 -
20372378-20373094,20373320-20373379,20373992-20374266,
20374358-20374619
Length = 437
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +2
Query: 284 PSCQWRPSPDPGQVRSCPRCPSLHTGIRSECRSPCSRP 397
P+C+ RPSP + + S H ++ EC + + P
Sbjct: 252 PACRHRPSPSSSSTTTAQQHTSFHQLLQGECSAAAAAP 289
>05_05_0036 -
21758409-21758531,21758891-21759206,21759964-21761121,
21761236-21761333
Length = 564
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 185 VRWPWICHDGWPRLFDASI*SSASLLPHVRSE 90
VR+ W+C+D RL D S+ S S ++ E
Sbjct: 416 VRFEWVCYDSAKRLLDKSLYSVLSDFAQIQDE 447
>03_01_0564 - 4176177-4178096
Length = 639
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/51 (21%), Positives = 27/51 (52%)
Frame = +1
Query: 211 RRSIYPWVLWSYLSTMTWYQRLSATILSMETLAGSWPGSELSPMSITTYGY 363
RR ++PWVL ++ ++ W+ ++ ++++ G G S + +T +
Sbjct: 467 RRFLFPWVLGGFVMSIIWFYIIANELVALLVAFGVILGINPSILGLTVLAW 517
>07_03_0635 +
20151861-20152249,20152589-20152709,20154914-20154996,
20155819-20155903,20155987-20156277,20156555-20156645,
20157380-20158280,20158401-20158561,20158759-20158862,
20159040-20159205,20159283-20159378,20159694-20159800,
20160443-20160775,20161393-20161599,20161774-20161857,
20162887-20163020,20163166-20163393,20163541-20163712,
20164301-20164555,20164647-20164919
Length = 1426
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +1
Query: 208 ARRSIYPWVLWSYLSTMTWYQRLSATILSMETLAGSW--PGSELSPMSITTYGYPF 369
+R+ I PW +W Y ++ Y + ++ E LA W P ++ S +S T G F
Sbjct: 706 SRKDIKPWWIWGYWTSPMMYSNNALSV--NEFLASRWAIPNND-SSISAPTIGKAF 758
>04_04_0326 -
24407201-24407374,24407397-24407460,24408266-24408689,
24408885-24409057,24409178-24409275,24409723-24409853,
24410053-24410174,24411091-24411245,24411976-24412081,
24412328-24412419,24412499-24412620,24413444-24413544,
24413636-24413849,24414173-24414311,24415228-24415584
Length = 823
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = -1
Query: 212 LAVWPSRVQVRWPWICHDGWPRLFDASI*SSASLLPHVRSERLDI 78
LAV PS PW CH R+ +A +S P R E +
Sbjct: 731 LAVTPSMFTDHLPWRCHYAMQRVLEAQTAASCPDSPESRIELFSV 775
>01_06_1252 -
35748000-35748173,35748243-35748375,35749771-35749847,
35750465-35750509,35750584-35750679,35751125-35751130,
35751259-35751388,35751510-35751706
Length = 285
Score = 27.9 bits (59), Expect = 7.8
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -2
Query: 259 SSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSN-QVLLFFRTYA 95
SS G+ + +D I SG G A G GY+ PQSN +L+ +++A
Sbjct: 117 SSKAGDGSVKKDT-IGPHSGASSSSAQGMVGAYTQGMGYMQPQSNFHILVVLQSFA 171
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,451,562
Number of Sequences: 37544
Number of extensions: 456663
Number of successful extensions: 1336
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1336
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -