Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6347
(674 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical pr... 35 0.046
Z71177-2|CAA94867.1| 425|Caenorhabditis elegans Hypothetical pr... 35 0.061
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 32 0.43
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 32 0.43
D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein. 32 0.43
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 32 0.43
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 32 0.43
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z46791-7|CAA86760.2| 473|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z81581-4|CAB04663.2| 568|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z69636-1|CAA93465.2| 1180|Caenorhabditis elegans Hypothetical pr... 28 5.3
AF067616-11|AAC19194.2| 627|Caenorhabditis elegans Collagen pro... 28 5.3
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr... 28 7.0
U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linke... 28 7.0
U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linke... 28 7.0
U23529-7|AAL32211.1| 622|Caenorhabditis elegans G-protein-linke... 28 7.0
AF117301-1|AAF26202.1| 622|Caenorhabditis elegans G protein-lin... 28 7.0
AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-lin... 28 7.0
AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-lin... 28 7.0
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 27 9.2
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 27 9.2
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 27 9.2
>Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical
protein AC3.4 protein.
Length = 425
Score = 35.1 bits (77), Expect = 0.046
Identities = 25/114 (21%), Positives = 45/114 (39%), Gaps = 6/114 (5%)
Frame = +2
Query: 236 CGVTCQR*LGTSGCRQPSCQWRPSPDPGQVRSCPRCPSLHTGIRSECRSPCSRPKKR*CE 415
C TCQ+ TS C P+ P + +C + + T +C C + ++ C
Sbjct: 105 CQSTCQQSCQTSSCYTPTTPAPVQCQPSCMPACEQSCVVQTPAAVQCVPQCQQQCQQQCV 164
Query: 416 ILEIVLKC---C--ECV-TCVSVCFYDVRVLRSECEFVCYIVPVIFSACTHECV 559
+ + +C C +CV C ++++ E VP +C +CV
Sbjct: 165 QTQPIQQCQPQCQQQCVQQCAPTTTAAPQIIKINMEISAQCVPQCQQSCQQQCV 218
>Z71177-2|CAA94867.1| 425|Caenorhabditis elegans Hypothetical
protein AC3.3 protein.
Length = 425
Score = 34.7 bits (76), Expect = 0.061
Identities = 25/114 (21%), Positives = 45/114 (39%), Gaps = 6/114 (5%)
Frame = +2
Query: 236 CGVTCQR*LGTSGCRQPSCQWRPSPDPGQVRSCPRCPSLHTGIRSECRSPCSRPKKR*CE 415
C TCQ+ TS C P+ P + +C + + T +C C + ++ C
Sbjct: 105 CQSTCQQSCQTSSCYTPTTPAPVQCQPSCMPACEQSCVVQTPAPVQCVPQCQQQCQQQCV 164
Query: 416 ILEIVLKC---C--ECV-TCVSVCFYDVRVLRSECEFVCYIVPVIFSACTHECV 559
+ + +C C +CV C ++++ E VP +C +CV
Sbjct: 165 QTQPIQQCQPQCQQQCVQQCAPTTTAAPQIIKINMEISAQCVPQCQQSCQQQCV 218
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 31.9 bits (69), Expect = 0.43
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = -1
Query: 392 DYMVIGIQNGYPYVVMDIGDSSEPGQDPARVSIDKMVADNRWYQVIVDR 246
DY+ I+ G P + +D+GD+ PA V +D V D W ++ ++R
Sbjct: 2751 DYVAAEIEYGRPKITVDLGDA------PAVVKLDTPVNDGLWRRLNIER 2793
Score = 31.1 bits (67), Expect = 0.75
Identities = 17/78 (21%), Positives = 37/78 (47%)
Frame = -2
Query: 304 GSPLTRWLPTTAGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSN 125
G P+ W G +++ G +P+ I+ + DG GY + + ++
Sbjct: 2865 GEPIGLWNSREKGN-TNVNGAQKKPK---ITDNADELVVSLDGEGYTSYKPSHWNPRKAT 2920
Query: 124 QVLLFFRTYAPNGLIYIL 71
++ L F T++P+GL++ +
Sbjct: 2921 KISLSFLTFSPHGLLFFV 2938
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 31.9 bits (69), Expect = 0.43
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = -1
Query: 392 DYMVIGIQNGYPYVVMDIGDSSEPGQDPARVSIDKMVADNRWYQVIVDR 246
DY+ I+ G P + +D+GD+ PA V +D V D W ++ ++R
Sbjct: 2751 DYVAAEIEYGRPKITVDLGDA------PAVVKLDTPVNDGLWRRLNIER 2793
Score = 31.1 bits (67), Expect = 0.75
Identities = 17/78 (21%), Positives = 37/78 (47%)
Frame = -2
Query: 304 GSPLTRWLPTTAGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSN 125
G P+ W G +++ G +P+ I+ + DG GY + + ++
Sbjct: 2865 GEPIGLWNSREKGN-TNVNGAQKKPK---ITDNADELVVSLDGEGYTSYKPSHWNPRKAT 2920
Query: 124 QVLLFFRTYAPNGLIYIL 71
++ L F T++P+GL++ +
Sbjct: 2921 KISLSFLTFSPHGLLFFV 2938
>D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.
Length = 1518
Score = 31.9 bits (69), Expect = 0.43
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = -1
Query: 392 DYMVIGIQNGYPYVVMDIGDSSEPGQDPARVSIDKMVADNRWYQVIVDR 246
DY+ I+ G P + +D+GD+ PA V +D V D W ++ ++R
Sbjct: 565 DYVAAEIEYGRPKITVDLGDA------PAVVKLDTPVNDGLWRRLNIER 607
Score = 31.1 bits (67), Expect = 0.75
Identities = 17/78 (21%), Positives = 37/78 (47%)
Frame = -2
Query: 304 GSPLTRWLPTTAGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSN 125
G P+ W G +++ G +P+ I+ + DG GY + + ++
Sbjct: 679 GEPIGLWNSREKGN-TNVNGAQKKPK---ITDNADELVVSLDGEGYTSYKPSHWNPRKAT 734
Query: 124 QVLLFFRTYAPNGLIYIL 71
++ L F T++P+GL++ +
Sbjct: 735 KISLSFLTFSPHGLLFFV 752
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 31.9 bits (69), Expect = 0.43
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = -1
Query: 392 DYMVIGIQNGYPYVVMDIGDSSEPGQDPARVSIDKMVADNRWYQVIVDR 246
DY+ I+ G P + +D+GD+ PA V +D V D W ++ ++R
Sbjct: 2751 DYVAAEIEYGRPKITVDLGDA------PAVVKLDTPVNDGLWRRLNIER 2793
Score = 31.1 bits (67), Expect = 0.75
Identities = 17/78 (21%), Positives = 37/78 (47%)
Frame = -2
Query: 304 GSPLTRWLPTTAGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSN 125
G P+ W G +++ G +P+ I+ + DG GY + + ++
Sbjct: 2865 GEPIGLWNSREKGN-TNVNGAQKKPK---ITDNADELVVSLDGEGYTSYKPSHWNPRKAT 2920
Query: 124 QVLLFFRTYAPNGLIYIL 71
++ L F T++P+GL++ +
Sbjct: 2921 KISLSFLTFSPHGLLFFV 2938
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 31.9 bits (69), Expect = 0.43
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = -1
Query: 392 DYMVIGIQNGYPYVVMDIGDSSEPGQDPARVSIDKMVADNRWYQVIVDR 246
DY+ I+ G P + +D+GD+ PA V +D V D W ++ ++R
Sbjct: 2751 DYVAAEIEYGRPKITVDLGDA------PAVVKLDTPVNDGLWRRLNIER 2793
Score = 31.1 bits (67), Expect = 0.75
Identities = 17/78 (21%), Positives = 37/78 (47%)
Frame = -2
Query: 304 GSPLTRWLPTTAGTKSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSN 125
G P+ W G +++ G +P+ I+ + DG GY + + ++
Sbjct: 2865 GEPIGLWNSREKGN-TNVNGAQKKPK---ITDNADELVVSLDGEGYTSYKPSHWNPRKAT 2920
Query: 124 QVLLFFRTYAPNGLIYIL 71
++ L F T++P+GL++ +
Sbjct: 2921 KISLSFLTFSPHGLLFFV 2938
>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
ZK783.1 protein.
Length = 2585
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +2
Query: 353 HTGIRSECRSPCSRPKKR*CEILEIVLKCCECVTCVSVCFYDVRVLRSECE 505
H+G + C+ P +R CE +E + V+C+SV Y+ L S CE
Sbjct: 1653 HSGFEGDGIKKCTNPLERSCEDVEKFCGRVDHVSCLSVRIYN-GSLSSVCE 1702
>Z46791-7|CAA86760.2| 473|Caenorhabditis elegans Hypothetical
protein C09G5.1 protein.
Length = 473
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 229 WVLWSYLSTMTWYQ-RLSATILSMETLAGSWPGSELSPMSITTYGY 363
+++W Y + WY R+S T+L M+ LA S+ + I +Y Y
Sbjct: 144 FLVWIYPNGTVWYDCRISLTVLCMQDLARYPLDSQNCGLRILSYAY 189
>Z81581-4|CAB04663.2| 568|Caenorhabditis elegans Hypothetical
protein T02E1.2 protein.
Length = 568
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = -3
Query: 465 TLTH-VTHS-QHFNTISNISHYRFLGRLHGDRHSERIPV 355
TL H T+S QHF+ ++ Y+F G L D +E +P+
Sbjct: 342 TLAHFATYSFQHFDEFVHVVPYKFSGTLDRDLRNEIMPI 380
>Z69636-1|CAA93465.2| 1180|Caenorhabditis elegans Hypothetical
protein F20B10.1 protein.
Length = 1180
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -1
Query: 392 DYMVIGIQNGYPYVVMDIGDSSEPGQDPARVSIDKMVADNRWYQV 258
D ++ I +G +V+ D G + P+R+S K + D RW+++
Sbjct: 171 DVLIAQIIHGTVHVIFDFGSLT-----PSRISAGKALDDGRWHEM 210
>AF067616-11|AAC19194.2| 627|Caenorhabditis elegans Collagen
protein 99 protein.
Length = 627
Score = 28.3 bits (60), Expect = 5.3
Identities = 20/62 (32%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Frame = +2
Query: 209 RGDQFIPGFCGVTCQR*LGTSGCRQPSCQWRPSPDPGQV---RSCPRCPSLHTGIRSECR 379
+GDQ IPG C G G P C W+P V R P G +E R
Sbjct: 566 KGDQGIPGL-DAPCPT--GPDGLPLPYCSWKPMDGKNDVWERRKRASLPGAQPGKGAETR 622
Query: 380 SP 385
P
Sbjct: 623 PP 624
>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
presynaptic morphologyprotein 1 protein.
Length = 3766
Score = 27.9 bits (59), Expect = 7.0
Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Frame = +2
Query: 332 CPRCPSLHTGIRSECRSPCSRPKKR*CEILEIVLKCCECVTCVSVC-FYDVRVLRSECEF 508
C +C + G S C++ + E+L C + V VC + V L +C F
Sbjct: 3633 CHKCKKAYFGGESRCQAALDSSQFNPEELL---CGGCSDTSGVQVCPRHGVEYLEYKCRF 3689
Query: 509 VCYIVPVIFSACTHEC 556
C I TH C
Sbjct: 3690 CCSIAVYFCFGTTHFC 3705
>U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform b protein.
Length = 713
Score = 27.9 bits (59), Expect = 7.0
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 515 YIVPVIFSACTHECVISLLYAVIWYKSLL 601
YI+ ++ C EC+ S LY + +Y L
Sbjct: 653 YIMATVYGFCKGECIPSFLYTLSYYMCYL 681
>U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform a protein.
Length = 682
Score = 27.9 bits (59), Expect = 7.0
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 515 YIVPVIFSACTHECVISLLYAVIWYKSLL 601
YI+ ++ C EC+ S LY + +Y L
Sbjct: 622 YIMATVYGFCKGECIPSFLYTLSYYMCYL 650
>U23529-7|AAL32211.1| 622|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform c protein.
Length = 622
Score = 27.9 bits (59), Expect = 7.0
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 515 YIVPVIFSACTHECVISLLYAVIWYKSLL 601
YI+ ++ C EC+ S LY + +Y L
Sbjct: 562 YIMATVYGFCKGECIPSFLYTLSYYMCYL 590
>AF117301-1|AAF26202.1| 622|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1c protein.
Length = 622
Score = 27.9 bits (59), Expect = 7.0
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 515 YIVPVIFSACTHECVISLLYAVIWYKSLL 601
YI+ ++ C EC+ S LY + +Y L
Sbjct: 562 YIMATVYGFCKGECIPSFLYTLSYYMCYL 590
>AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1a protein.
Length = 713
Score = 27.9 bits (59), Expect = 7.0
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 515 YIVPVIFSACTHECVISLLYAVIWYKSLL 601
YI+ ++ C EC+ S LY + +Y L
Sbjct: 653 YIMATVYGFCKGECIPSFLYTLSYYMCYL 681
>AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1b protein.
Length = 682
Score = 27.9 bits (59), Expect = 7.0
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 515 YIVPVIFSACTHECVISLLYAVIWYKSLL 601
YI+ ++ C EC+ S LY + +Y L
Sbjct: 622 YIMATVYGFCKGECIPSFLYTLSYYMCYL 650
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 27.5 bits (58), Expect = 9.2
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +3
Query: 300 DPRRILARFGAVPDVHHYIRVSVLNAD--HHVVVLKNGSVKY*KLC 431
DPRR ARF A+ D HH I S +NAD V L ++K + C
Sbjct: 1068 DPRR--ARF-ALTDFHHCIESSRVNADEIRKTVQLTENNIKKLENC 1110
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 27.5 bits (58), Expect = 9.2
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +3
Query: 300 DPRRILARFGAVPDVHHYIRVSVLNAD--HHVVVLKNGSVKY*KLC 431
DPRR ARF A+ D HH I S +NAD V L ++K + C
Sbjct: 1068 DPRR--ARF-ALTDFHHCIESSRVNADEIRKTVQLTENNIKKLENC 1110
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 27.5 bits (58), Expect = 9.2
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +3
Query: 300 DPRRILARFGAVPDVHHYIRVSVLNAD--HHVVVLKNGSVKY*KLC 431
DPRR ARF A+ D HH I S +NAD V L ++K + C
Sbjct: 651 DPRR--ARF-ALTDFHHCIESSRVNADEIRKTVQLTENNIKKLENC 693
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,572,877
Number of Sequences: 27780
Number of extensions: 396666
Number of successful extensions: 1082
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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