Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6347
         (674 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    25   0.87 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.5  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   8.1  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 24.6 bits (51), Expect = 0.87
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 1   PNQFSSGPGASYTAATLLRRPTP*EC 78
           P   S GPGA+  AA L +R +  EC
Sbjct: 151 PTGSSCGPGAAAAAALLSKRRSVSEC 176


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 597  NDLYHITAYNKLITHS*VHALNITGTI*HTNSHSLR 490
            N   H T  ++LI H+  H+  IT T   TNS +++
Sbjct: 1350 NTFGHDTVTHQLIVHAPPHSPQITLTATTTNSLTMK 1385


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -3

Query: 339 RGQLRTWPGSGEG 301
           RGQLRT   SGEG
Sbjct: 396 RGQLRTKIESGEG 408


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,008
Number of Sequences: 438
Number of extensions: 5241
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)