Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6346
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   3.8  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    26   5.0  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    26   5.0  
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos...    25   8.8  

>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = -1

Query: 522  ECSSFLECRRVADYKSAIMLQFHVTHLNRHLSSMKEKIKSRPFQKFNSC 376
            E SSF+E   ++   S ++  F++   +  LSS+KEK++S    K  SC
Sbjct: 3798 ETSSFIE---MSSCFSKVLRAFNLKFQSMKLSSLKEKLRSSSVDKM-SC 3842


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = +2

Query: 476 DL*SATRRHSKKLEHSMTGKSR*GLSVNR-YNKKINDYLLNETFRTDML 619
           DL S+T  HS  L  S+ G  R    +NR Y++++ DY ++ +FR  +L
Sbjct: 411 DLLSSTNPHSTLLSTSV-GPLR-KFPLNRSYSREVGDYDISASFRDGLL 457


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 337 RSVVLIMLFEK*MTRVE-FLKRARLYFFFHRA*MSVEVSH 453
           R+ +L ++F     R+  FL R RLY F HR   ++ + H
Sbjct: 766 RNALLRVIFNSFSARIRGFLTRRRLYRFNHRQDAAILLQH 805


>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -2

Query: 668 RSYSGRTARSII--KSYKLTYQF*KSHLINSRLFFYCI 561
           + YSGRT +SII   S  L   F ++ ++ S +F+  +
Sbjct: 247 KKYSGRTVKSIIHANSQLLYLMFGRNSMLGSAVFWQAV 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,047,492
Number of Sequences: 5004
Number of extensions: 63127
Number of successful extensions: 137
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)